Non-Coding RNA Search

Ss1.1-rcbl0_023862.5

Sequence:


               
               AAATGTCAGCTTTCATGTCCTTCATCAGCGTTTTCCTCTCTTTACCTTTCGAGTCTTATC
AGATTGGTTTGATAACAAGACAGATCTATACAGATGGAAAATGGTTGATCATTACATTAG
CCGTGTCCGTGGAAATCTCCAAATGTTAGAACAGCTGGACCTGATTGGGAAAACCAGTGA
AATGGCTAGACTTTTCGGCATTCAGTTTTTACATGTACTGACAAGAGGTTCACAGTACCG
TGTGGAATCAATGATGCTGCGTATTGCTAAACCAATGAACTATATTCCTGTGACACCCAG
TGTACAGCAGAGATCACAGATGAGAGCCCCACAGTGTGTTCCCCTAATTATGGAGCCTGA
ATCTCGCTTCTATAGCAACTCTGTATGCCACTTACTATATCACCAAGCAGATCCTTCCAC
CCCTGGCAAGAATCTTCTCACTAATTGGTATTGATGTCTTCAACTGGTATCATGAATTAC
CAAGGAAAGCCACCAGCTCCTCTCGAAGTGAACATGAAGGGCGGAAAGGCACTATTTCAC
AGTATTTCACTACCTTACACTGTCCTGTGTGTGATGACCTGACTCAGCATGGCATCTGTA
CTAAATGTCGCAGCCAACCTCAGCACGTTGCAGTCATCCTCAATCAAGAAATTCGAGAGT
TGGAACGTCAACAGGAGCAGCTTGTAAAGATATGCAGAAACTGTACCGGTTGCTTTGATC
GACATATCCCGTGTGTTTCTCTGAACTGCCCAGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGTCAGCTTTCATGTCCTTCATCAGCGTTTTCCTCTCTTTACCTTTCGAGTCTTATC
AGATTGGTTTGATAACAAGACAGATCTATACAGATGGAAAATGGTTGATCATTACATTAG
CCGTGTCCGTGGAAATCTCCAAATGTTAGAACAGCTGGACCTGATTGGGAAAACCAGTGA
AATGGCTAGACTTTTCGGCATTCAGTTTTTACATGTACTGACAAGAGGTTCACAGTACCG
TGTGGAATCAATGATGCTGCGTATTGCTAAACCAATGAACTATATTCCTGTGACACCCAG
TGTACAGCAGAGATCACAGATGAGAGCCCCACAGTGTGTTCCCCTAATTATGGAGCCTGA
ATCTCGCTTCTATAGCAACTCTGTATGCCACTTACTATATCACCAAGCAGATCCTTCCAC
CCCTGGCAAGAATCTTCTCACTAATTGGTATTGATGTCTTCAACTGGTATCATGAATTAC
CAAGGAAAGCCACCAGCTCCTCTCGAAGTGAACATGAAGGGCGGAAAGGCACTATTTCAC
AGTATTTCACTACCTTACACTGTCCTGTGTGTGATGACCTGACTCAGCATGGCATCTGTA
CTAAATGTCGCAGCCAACCTCAGCACGTTGCAGTCATCCTCAATCAAGAAATTCGAGAGT
TGGAACGTCAACAGGAGCAGCTTGTAAAGATATGCAGAAACTGTACCGGTTGCTTTGATC
GACATATCCCGTGTGTTTCTCTGAACTGCCCAGTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K2Y1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K2Y1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               90-208, + strand, RNAz p=0.9726

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-208, + strand, RNAz p=0.9726

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               90-235, gnl|bosTau2|chr9 (20227799-20227944)
               

               
               90-235, gnl|canFam2|chr12 (70851003-70851184)
               

               
               90-235, gnl|danRer3|chrNA (199325651-199325494)
               

               
               90-235, gnl|dasNov1|scaffold_272401 (34-217)
               

               
               90-235, gnl|echTel1|scaffold_306451 (15873-15689)
               

               
               90-235, gnl|fr1|chrUn (255571231-255571410)
               

               
               90-235, gnl|galGal2|chr3 (64584445-64584264)
               

               
               90-235, gnl|hg17|chr6 (111763345-111763526)
               

               
               90-235, gnl|Hg17|chr6 (111763510-111763365)
               

               
               90-235, gnl|loxAfr1|scaffold_744 (164417-164233)
               

               
               90-235, gnl|mm7|chr10 (39626100-39625923)
               

               
               90-235, gnl|Mm7|chr10 (39625937-39626082)
               

               
               90-235, gnl|monDom2|scaffold_0 (108509201-108509023)
               

               
               90-235, gnl|oryCun1|scaffold_201015 (5754-5935)
               

               
               90-235, gnl|panTro1|chr5 (114111687-114111868)
               

               
               90-235, gnl|rheMac2|chr4 (152604099-152603918)
               

               
               90-235, gnl|rn3|chr20 (44034636-44034459)
               

               
               90-235, gnl|tetNig1|chrUn_random (156359777-156359631)
               

               
               90-235, gnl|xenTro1|scaffold_174 (767269-767442)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-235, gnl|bosTau2|chr9 (20227799-20227944)
               

               
               90-235, gnl|canFam2|chr12 (70851003-70851184)
               

               
               90-235, gnl|danRer3|chrNA (199325651-199325494)
               

               
               90-235, gnl|dasNov1|scaffold_272401 (34-217)
               

               
               90-235, gnl|echTel1|scaffold_306451 (15873-15689)
               

               
               90-235, gnl|fr1|chrUn (255571231-255571410)
               

               
               90-235, gnl|galGal2|chr3 (64584445-64584264)
               

               
               90-235, gnl|hg17|chr6 (111763345-111763526)
               

               
               90-235, gnl|Hg17|chr6 (111763510-111763365)
               

               
               90-235, gnl|loxAfr1|scaffold_744 (164417-164233)
               

               
               90-235, gnl|mm7|chr10 (39626100-39625923)
               

               
               90-235, gnl|Mm7|chr10 (39625937-39626082)
               

               
               90-235, gnl|monDom2|scaffold_0 (108509201-108509023)
               

               
               90-235, gnl|oryCun1|scaffold_201015 (5754-5935)
               

               
               90-235, gnl|panTro1|chr5 (114111687-114111868)
               

               
               90-235, gnl|rheMac2|chr4 (152604099-152603918)
               

               
               90-235, gnl|rn3|chr20 (44034636-44034459)
               

               
               90-235, gnl|tetNig1|chrUn_random (156359777-156359631)
               

               
               90-235, gnl|xenTro1|scaffold_174 (767269-767442)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbl (0.688784)
               

               
               fce (0.271592)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               cut (0.169924)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.688784)
               

               
               fce (0.271592)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               cut (0.169924)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               med (0.116252)

	90-235, gnl\|bosTau2\|chr9 (20227799-20227944)
	90-235, gnl\|canFam2\|chr12 (70851003-70851184)
	90-235, gnl\|danRer3\|chrNA (199325651-199325494)
	90-235, gnl\|dasNov1\|scaffold_272401 (34-217)
	90-235, gnl\|echTel1\|scaffold_306451 (15873-15689)
	90-235, gnl\|fr1\|chrUn (255571231-255571410)
	90-235, gnl\|galGal2\|chr3 (64584445-64584264)
	90-235, gnl\|hg17\|chr6 (111763345-111763526)
	90-235, gnl\|Hg17\|chr6 (111763510-111763365)
	90-235, gnl\|loxAfr1\|scaffold_744 (164417-164233)
	90-235, gnl\|mm7\|chr10 (39626100-39625923)
	90-235, gnl\|Mm7\|chr10 (39625937-39626082)
	90-235, gnl\|monDom2\|scaffold_0 (108509201-108509023)
	90-235, gnl\|oryCun1\|scaffold_201015 (5754-5935)
	90-235, gnl\|panTro1\|chr5 (114111687-114111868)
	90-235, gnl\|rheMac2\|chr4 (152604099-152603918)
	90-235, gnl\|rn3\|chr20 (44034636-44034459)
	90-235, gnl\|tetNig1\|chrUn_random (156359777-156359631)
	90-235, gnl\|xenTro1\|scaffold_174 (767269-767442)

	cbl (0.688784)
	fce (0.271592)
	mas (0.210305)
	tes (0.207814)
	cut (0.169924)
	liv (0.146284)
	spl (0.143184)
	med (0.116252)