Non-Coding RNA Search

Ss1.1-rcbl0_023872.5

Sequence:


               
               GGCCTAGTCTCAGAACCTTTGAGGGGCCCAGAAGTTGGGGGCCAGAGGACTTACTGGGTA
CTAAATAAGAAAGAAATCCTGTGACATGAAATGAGTAATGAATAATATATTCTAGCTGAA
AATCACATTTGTTTTTCTTCACCTTATTTAAAATGTTTTTCACTTTCTATTTTGTTTCAT
TTATCATTCCTCCAAATGCCACCTTGCCATGGAAGAAAATGCATGTAACAAAAAGAAATA
AAAATCATATCCATAACCCAAACATGTCAAACTAATCACCATTCATATTCTTTCACACAC
GCTGCCAAATTTTGTTTATATGTAATTATAAAACAAGTAGAAATGTGAATTTACGTCTAA
ATATATTACTTTTATATGTAATCCCCTTTTAAAAATGCTATTTTGCTGACTAACAAGCAC
CTGAAAAGATTCTAACATCATTAGTCATTATGGAAATGCAAATCAATGCCACAGTGTGAT
ACTACTTCACACCCACTAGGATGGAAAGGATATAAGAAATGGAAACTAACAAGTGTTTGA
AGATGTAGGGTAATTGGAATCTTCACATGTTACTTCTGGAAATATATATAAATGGTGCAG
CCACTGTGGAAA------------TTCCTCAGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTAGTCTCAGAACCTTTGAGGGGCCCAGAAGTTGGGGGCCAGAGGACTTACTGGGTA
CTAAATAAGAAAGAAATCCTGTGACATGAAATGAGTAATGAATAATATATTCTAGCTGAA
AATCACATTTGTTTTTCTTCACCTTATTTAAAATGTTTTTCACTTTCTATTTTGTTTCAT
TTATCATTCCTCCAAATGCCACCTTGCCATGGAAGAAAATGCATGTAACAAAAAGAAATA
AAAATCATATCCATAACCCAAACATGTCAAACTAATCACCATTCATATTCTTTCACACAC
GCTGCCAAATTTTGTTTATATGTAATTATAAAACAAGTAGAAATGTGAATTTACGTCTAA
ATATATTACTTTTATATGTAATCCCCTTTTAAAAATGCTATTTTGCTGACTAACAAGCAC
CTGAAAAGATTCTAACATCATTAGTCATTATGGAAATGCAAATCAATGCCACAGTGTGAT
ACTACTTCACACCCACTAGGATGGAAAGGATATAAGAAATGGAAACTAACAAGTGTTTGA
AGATGTAGGGTAATTGGAATCTTCACATGTTACTTCTGGAAATATATATAAATGGTGCAG
CCACTGTGGAAA------------TTCCTCAGTAAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               38-504, gnl|bosTau2|chr7 (6710585-6710138)
               

               
               38-504, gnl|canFam2|chr20 (49645409-49644887)
               

               
               38-504, gnl|hg17|chr19 (15603657-15604181)
               

               
               38-504, gnl|Hg17|chr19 (15603834-15604272)
               

               
               38-504, gnl|panTro1|chr20 (16311267-16311785)
               

               
               38-504, gnl|rheMac2|chr19 (15226888-15227390)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-504, gnl|bosTau2|chr7 (6710585-6710138)
               

               
               38-504, gnl|canFam2|chr20 (49645409-49644887)
               

               
               38-504, gnl|hg17|chr19 (15603657-15604181)
               

               
               38-504, gnl|Hg17|chr19 (15603834-15604272)
               

               
               38-504, gnl|panTro1|chr20 (16311267-16311785)
               

               
               38-504, gnl|rheMac2|chr19 (15226888-15227390)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	38-504, gnl\|bosTau2\|chr7 (6710585-6710138)
	38-504, gnl\|canFam2\|chr20 (49645409-49644887)
	38-504, gnl\|hg17\|chr19 (15603657-15604181)
	38-504, gnl\|Hg17\|chr19 (15603834-15604272)
	38-504, gnl\|panTro1\|chr20 (16311267-16311785)
	38-504, gnl\|rheMac2\|chr19 (15226888-15227390)