Ss1.1-rcbl0_023875.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGTACAGTGAATTACAAAATGATTTAGATCGGGAAACAAGCAGTTTGCAAGAGCTTG AAGCTCAGAAACAAGACGCCCAAGACCGCCTGGACGAAATGGACCAGCAGAAGGCCAAGC TCCGAGACATGTTGAGCGACGTCAGGCAGAAGTGCCAGGACGAGACCCAGATGATTTCCT CGCTGAAGACGCAGATTCAGTCTCAGGAATCCGACCTCAAGTCGCAGGAAGATGACCTGA ACCGGGCCAAATCTGAGCTGAACCGACTGCAGCAGGAGGAAACACAGCTGGAGCAGAGCA TTCAGGCTGGGAAAGTTCAACTGGAAACCATCATCAAGTCCCTAAAATCCACACAAGATG AAATCAACCAGGCAAGAAGCAAGCTTTCGCAGCTGCATGAAAGCCACCAGGAAGCCCAGC GGAGTCTGGAGCAGTGTGACCAGGCACTCGACGGGGCCCATGGAGCCAGCCTGACCAACC TAGCAGACCTGAGCGAGGGCGTCTCCTTGACAGAGAGGGGCGGTTTTGGAGCCATGGACG ATCCTTTCAAAAATAAAGCCTTGTTATTTAGCAACAACGCCCAGGAATTGCATCCAGATC CTTTCCAGGCAGAAGACCCCTTCAAATCTGACCCATTTAAAGGAGCCGATCCCTTCAAAG GTGACCCATTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGTACAGTGAATTACAAAATGATTTAGATCGGGAAACAAGCAGTTTGCAAGAGCTTG AAGCTCAGAAACAAGACGCCCAAGACCGCCTGGACGAAATGGACCAGCAGAAGGCCAAGC TCCGAGACATGTTGAGCGACGTCAGGCAGAAGTGCCAGGACGAGACCCAGATGATTTCCT CGCTGAAGACGCAGATTCAGTCTCAGGAATCCGACCTCAAGTCGCAGGAAGATGACCTGA ACCGGGCCAAATCTGAGCTGAACCGACTGCAGCAGGAGGAAACACAGCTGGAGCAGAGCA TTCAGGCTGGGAAAGTTCAACTGGAAACCATCATCAAGTCCCTAAAATCCACACAAGATG AAATCAACCAGGCAAGAAGCAAGCTTTCGCAGCTGCATGAAAGCCACCAGGAAGCCCAGC GGAGTCTGGAGCAGTGTGACCAGGCACTCGACGGGGCCCATGGAGCCAGCCTGACCAACC TAGCAGACCTGAGCGAGGGCGTCTCCTTGACAGAGAGGGGCGGTTTTGGAGCCATGGACG ATCCTTTCAAAAATAAAGCCTTGTTATTTAGCAACAACGCCCAGGAATTGCATCCAGATC CTTTCCAGGCAGAAGACCCCTTCAAATCTGACCCATTTAAAGGAGCCGATCCCTTCAAAG GTGACCCATTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 553-670, - strand, RNAz p=0.712273 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 553-670, - strand, RNAz p=0.712273 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 173-372, gnl|bosTau2|chr7 (5636065-5635866) | |
| 173-372, gnl|canFam2|chr20 (49123701-49123469) | |
| 173-372, gnl|danRer3|chr22 (14688751-14688522) | |
| 173-372, gnl|echTel1|scaffold_302331 (5564-5334) | |
| 173-372, gnl|fr1|chrUn (18665561-18665359) | |
| 173-372, gnl|galGal2|chr28 (3645317-3645073) | |
| 173-372, gnl|hg17|chr19 (16375539-16375782) | |
| 173-372, gnl|Hg17|chr19 (16375742-16375543) | |
| 173-372, gnl|loxAfr1|scaffold_131099 (1041-809) | |
| 173-372, gnl|mm7|chr8 (70902999-70903231) | |
| 173-372, gnl|Mm7|chr8 (70903202-70903003) | |
| 173-372, gnl|monDom2|scaffold_100 (2946347-2946579) | |
| 173-372, gnl|oryCun1|scaffold_208873 (31540-31307) | |
| 173-372, gnl|panTro1|chr20 (17058285-17058528) | |
| 173-372, gnl|rheMac2|chr19 (15945042-15945285) | |
| 173-372, gnl|rn3|chr16 (17883196-17882964) | |
| 173-372, gnl|tetNig1|chr15_random (2687536-2687738) | |
| 173-372, gnl|xenTro1|scaffold_1177 (89844-89611) | |
| 536-670, gnl|bosTau2|chr7 (5629145-5629011) | |
| 536-670, gnl|Hg17|chr19 (16367279-16367145) | |
| 536-670, gnl|Mm7|chr8 (70896842-70896714) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 173-372, gnl|bosTau2|chr7 (5636065-5635866) | |
| 173-372, gnl|canFam2|chr20 (49123701-49123469) | |
| 173-372, gnl|danRer3|chr22 (14688751-14688522) | |
| 173-372, gnl|echTel1|scaffold_302331 (5564-5334) | |
| 173-372, gnl|fr1|chrUn (18665561-18665359) | |
| 173-372, gnl|galGal2|chr28 (3645317-3645073) | |
| 173-372, gnl|hg17|chr19 (16375539-16375782) | |
| 173-372, gnl|Hg17|chr19 (16375742-16375543) | |
| 173-372, gnl|loxAfr1|scaffold_131099 (1041-809) | |
| 173-372, gnl|mm7|chr8 (70902999-70903231) | |
| 173-372, gnl|Mm7|chr8 (70903202-70903003) | |
| 173-372, gnl|monDom2|scaffold_100 (2946347-2946579) | |
| 173-372, gnl|oryCun1|scaffold_208873 (31540-31307) | |
| 173-372, gnl|panTro1|chr20 (17058285-17058528) | |
| 173-372, gnl|rheMac2|chr19 (15945042-15945285) | |
| 173-372, gnl|rn3|chr16 (17883196-17882964) | |
| 173-372, gnl|tetNig1|chr15_random (2687536-2687738) | |
| 173-372, gnl|xenTro1|scaffold_1177 (89844-89611) | |
| 536-670, gnl|bosTau2|chr7 (5629145-5629011) | |
| 536-670, gnl|Hg17|chr19 (16367279-16367145) | |
| 536-670, gnl|Mm7|chr8 (70896842-70896714) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) | |
| clu (0.119646) |