Non-Coding RNA Search

Ss1.1-rcbl0_023902.5

Sequence:


               
               GGCTCTGCTGAAAAGTATGACGTCAGTTCCCAAGTTATTTCCCAACTTAAGCAAAAGCTT
GAAAACCTACAGAATTTGAATCTCCCCCAAAGCTTTAGAGTTCCCTATGATCCTGGACTG
AAAGCCGGGGCACTGGTGATCGAAAAATGTAAAGTGATGGCCTCCAAGAAGAAGCCCCTG
TGGCTTGAGTTTAAATGTGCCGATCCTACGGCTCTATCAAATGAAACAATTGGAATTATC
TTTAAACACGGTGACGATCTGCGCCAAGACATGCTTATTTTACAGATTCTACGAATCATG
GAGTCCATTTGGGAGACCGAATCTTTGGATCTGTGCCTCCTGCCATATGGCTGCATTTCA
ACTGGTGACAAAATAGGAATGATCGAGATCGTAAAGGACGCCACGACAATCGCCAAAATT
CAGCAAAGCACAGTGGGCAACACGGGTGCCTTTAAAGATGAAGTCCTGAGTCACTGGCTC
AAAGAAAAATGCCCTATTGAAGAAAAGTTTCAGGCAGCTGTGGAGAGATTTGTTTATTCC
TGTGCCGGCTACTGTGTGGCAACCTTTGTTCTCGGAATAGGCGACAGACACAATGACAAT
ATTATGATCTCAGAAACAGGAAATCTATTTCATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCTGCTGAAAAGTATGACGTCAGTTCCCAAGTTATTTCCCAACTTAAGCAAAAGCTT
GAAAACCTACAGAATTTGAATCTCCCCCAAAGCTTTAGAGTTCCCTATGATCCTGGACTG
AAAGCCGGGGCACTGGTGATCGAAAAATGTAAAGTGATGGCCTCCAAGAAGAAGCCCCTG
TGGCTTGAGTTTAAATGTGCCGATCCTACGGCTCTATCAAATGAAACAATTGGAATTATC
TTTAAACACGGTGACGATCTGCGCCAAGACATGCTTATTTTACAGATTCTACGAATCATG
GAGTCCATTTGGGAGACCGAATCTTTGGATCTGTGCCTCCTGCCATATGGCTGCATTTCA
ACTGGTGACAAAATAGGAATGATCGAGATCGTAAAGGACGCCACGACAATCGCCAAAATT
CAGCAAAGCACAGTGGGCAACACGGGTGCCTTTAAAGATGAAGTCCTGAGTCACTGGCTC
AAAGAAAAATGCCCTATTGAAGAAAAGTTTCAGGCAGCTGTGGAGAGATTTGTTTATTCC
TGTGCCGGCTACTGTGTGGCAACCTTTGTTCTCGGAATAGGCGACAGACACAATGACAAT
ATTATGATCTCAGAAACAGGAAATCTATTTCATATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61836849|ref|XP_585634.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61836849|ref|XP_585634.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               138-285, gnl|bosTau2|chr4 (24482782-24482635)
               

               
               138-285, gnl|Hg17|chr7 (106113914-106114061)
               

               
               138-285, gnl|Mm7|chr12 (30037020-30036873)
               


               
               375-507, gnl|bosTau2|chr4 (24480101-24479969)
               

               
               375-507, gnl|Hg17|chr7 (106117427-106117559)
               

               
               375-507, gnl|Mm7|chr12 (30034514-30034382)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-285, gnl|bosTau2|chr4 (24482782-24482635)
               

               
               138-285, gnl|Hg17|chr7 (106113914-106114061)
               

               
               138-285, gnl|Mm7|chr12 (30037020-30036873)
               


               
               375-507, gnl|bosTau2|chr4 (24480101-24479969)
               

               
               375-507, gnl|Hg17|chr7 (106117427-106117559)
               

               
               375-507, gnl|Mm7|chr12 (30034514-30034382)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.344392)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               liv (0.146284)

	138-285, gnl\|bosTau2\|chr4 (24482782-24482635)
	138-285, gnl\|Hg17\|chr7 (106113914-106114061)
	138-285, gnl\|Mm7\|chr12 (30037020-30036873)

	375-507, gnl\|bosTau2\|chr4 (24480101-24479969)
	375-507, gnl\|Hg17\|chr7 (106117427-106117559)
	375-507, gnl\|Mm7\|chr12 (30034514-30034382)