Non-Coding RNA Search

Ss1.1-rcbl0_023983.5.5

Sequence:


               
               GCGGCTCGAGAAAAAAGTTTAGTCGGAAACAGTTGTAAATTCAACTTGCAGCTTATTTAA
TTGACTTTTCTGTCAGGTTGGGGCACATGCCAAGCCTTCTGGTTTTCTGCCTGGCATGGA
TTTAGGCAGCAGACATCATTTTCATTTTTCCAGCTTCATGGGAGTGTTGTGACGTCACCA
TTCTGTGGAGGTTGGGAAGGACCAGAGGCCTTGGCTGCCCTGCCTTCTCCTTAGGACTCT
TCACTTTTCTCACCACATCTCTTTCATGACTTCCTGGTACTGAGGACAAATTTTGTATGC
TTTCACCCCCGAATCAGCTGGGTCGTGTGTCTTTTGTAGCAGAGCCCGTACAGCCTGTGG
AAGAACTAGAATCTCACTGTAAGAAGAATCTAGGAGGAATTCCAAACTGAAGCAGGCAGG
GTCTGGAACCCAAAGGGACAGCGTTTTCTACCCACTTCTTCATATTGACAGCTTACCAGT
TCTATTTAACGTCCAAAAAGTGGTTCCCAAAATTTTGAACTCTTTCACTGTAAAGATTTG
ATACAGAGAATGTGGTTTGGGGAATTACCTTATTTTATATTGTTGTAAACACACCAGATC
CTAAATGTGCCGCTTTTCTCCTTCCCTGAGGGTATGTGTTCAGTACCTGGCATTTTCGGA
ATTGTTTTAATATACTTTAACACTTTAAATTTCCTGTTTGTATTATTTTGTGAGATCAAG
TTGATTATGCTGCTTAAGGTCCAGGTACAATTTGTACCTTTTGAGACAATATTTGTTACT
CTCACAGGTTACGGTTCCACATGTAATTGTTTTTGTTTTGTAATTGTTTTTCCTTACCAG
GCAAAGTTTAAGAAAATGCTCAGTGCTTTGAGGAGTGACCCATTTCACCATTTAGTTTTC
TTATCACTGAAGGCAAAAATCAAAGCACAGTTGTCCATTAACACTCACGAGTTAATTATG
GGTTTATGAATCTGTAATGTTATATGCTGCAAATATTTACTATGTAAACGAAAAGTAGCC
AATATCTCAATAGCAATGACAGTATTTCCAGCAACCTTTGGAATGGTTAGGCTTTAAGGC
ACAGGTCGTTGTGGTCATGAAGGCCTCTGTACCAAGATTTTGTTTCAGGGAATGCTCTGT
CTAGTGATTTAATTCATCATTTGATATAAAATGAATTTAGGACAAGTTGACCTGCTGTAG
CTTATCCATCAGAGGGAATACATGTGGCTATGACGTCTATAATAAAGGTGACACAATTCC
TCTTCAAGGGTTGTTTCCCATTGCTAACGTTGGTATTTCTGGTGTGGGAGGAAATGTTCA
AGGAGTGTGCATGACATCTATGTTTTGCTTAATTTATCAGACAGCCACATTGTAATAACT
GTGTGATGCTCGTCTGAAAAGGGAAGAAACAGGATGATTTTCGGTAGCTACAACTGTGAG
GTATGGTGACTTAAATTATTTGGATTACCATTTTTTCTTTTCTGAAAGCACATCTGGGCA
TCACCTCTGGGGAAGCTGTAACTTTAAGGTAGTCAATCTCATGTTTTTATTAAAGATGGA
AGCAGAAACTGAATTACCCTAATTTTGCCAAGTGGCCATTGTTGGGTTTATTGTATGCTT
TTTGTAAAGGAAATAATCCCATTTCACTCATTGTCACTTTTGTCCTTAGGGAGGCAGAGA
TGACTCCAAGTTCTGATAAAGTGTGCTTCCCTAATTTAAAGCCATGTTGCGGGACTCTAT
CCCCACTTCCTGGGTCAAGTTGAATTAACCGCAAGTTGGAGCACTGGAAACTGTTATTTG
CAAATATTACTGTTACCATTTAGAAATATGTACACTACCTAAGTTTTCTTTTGAGAAAAA
CCATCCACCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGAAAAAAGTTTAGTCGGAAACAGTTGTAAATTCAACTTGCAGCTTATTTAA
TTGACTTTTCTGTCAGGTTGGGGCACATGCCAAGCCTTCTGGTTTTCTGCCTGGCATGGA
TTTAGGCAGCAGACATCATTTTCATTTTTCCAGCTTCATGGGAGTGTTGTGACGTCACCA
TTCTGTGGAGGTTGGGAAGGACCAGAGGCCTTGGCTGCCCTGCCTTCTCCTTAGGACTCT
TCACTTTTCTCACCACATCTCTTTCATGACTTCCTGGTACTGAGGACAAATTTTGTATGC
TTTCACCCCCGAATCAGCTGGGTCGTGTGTCTTTTGTAGCAGAGCCCGTACAGCCTGTGG
AAGAACTAGAATCTCACTGTAAGAAGAATCTAGGAGGAATTCCAAACTGAAGCAGGCAGG
GTCTGGAACCCAAAGGGACAGCGTTTTCTACCCACTTCTTCATATTGACAGCTTACCAGT
TCTATTTAACGTCCAAAAAGTGGTTCCCAAAATTTTGAACTCTTTCACTGTAAAGATTTG
ATACAGAGAATGTGGTTTGGGGAATTACCTTATTTTATATTGTTGTAAACACACCAGATC
CTAAATGTGCCGCTTTTCTCCTTCCCTGAGGGTATGTGTTCAGTACCTGGCATTTTCGGA
ATTGTTTTAATATACTTTAACACTTTAAATTTCCTGTTTGTATTATTTTGTGAGATCAAG
TTGATTATGCTGCTTAAGGTCCAGGTACAATTTGTACCTTTTGAGACAATATTTGTTACT
CTCACAGGTTACGGTTCCACATGTAATTGTTTTTGTTTTGTAATTGTTTTTCCTTACCAG
GCAAAGTTTAAGAAAATGCTCAGTGCTTTGAGGAGTGACCCATTTCACCATTTAGTTTTC
TTATCACTGAAGGCAAAAATCAAAGCACAGTTGTCCATTAACACTCACGAGTTAATTATG
GGTTTATGAATCTGTAATGTTATATGCTGCAAATATTTACTATGTAAACGAAAAGTAGCC
AATATCTCAATAGCAATGACAGTATTTCCAGCAACCTTTGGAATGGTTAGGCTTTAAGGC
ACAGGTCGTTGTGGTCATGAAGGCCTCTGTACCAAGATTTTGTTTCAGGGAATGCTCTGT
CTAGTGATTTAATTCATCATTTGATATAAAATGAATTTAGGACAAGTTGACCTGCTGTAG
CTTATCCATCAGAGGGAATACATGTGGCTATGACGTCTATAATAAAGGTGACACAATTCC
TCTTCAAGGGTTGTTTCCCATTGCTAACGTTGGTATTTCTGGTGTGGGAGGAAATGTTCA
AGGAGTGTGCATGACATCTATGTTTTGCTTAATTTATCAGACAGCCACATTGTAATAACT
GTGTGATGCTCGTCTGAAAAGGGAAGAAACAGGATGATTTTCGGTAGCTACAACTGTGAG
GTATGGTGACTTAAATTATTTGGATTACCATTTTTTCTTTTCTGAAAGCACATCTGGGCA
TCACCTCTGGGGAAGCTGTAACTTTAAGGTAGTCAATCTCATGTTTTTATTAAAGATGGA
AGCAGAAACTGAATTACCCTAATTTTGCCAAGTGGCCATTGTTGGGTTTATTGTATGCTT
TTTGTAAAGGAAATAATCCCATTTCACTCATTGTCACTTTTGTCCTTAGGGAGGCAGAGA
TGACTCCAAGTTCTGATAAAGTGTGCTTCCCTAATTTAAAGCCATGTTGCGGGACTCTAT
CCCCACTTCCTGGGTCAAGTTGAATTAACCGCAAGTTGGAGCACTGGAAACTGTTATTTG
CAAATATTACTGTTACCATTTAGAAATATGTACACTACCTAAGTTTTCTTTTGAGAAAAA
CCATCCACCTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1664-1775, - strand, RNAz p=0.783192

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1664-1775, - strand, RNAz p=0.783192

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-1872, gnl|bosTau2|chr13 (46210019-46208167)
               

               
               11-1872, gnl|Hg17|chr20 (33999283-34001466)
               

               
               11-1872, gnl|Mm7|chr2 (156048611-156050591)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1872, gnl|bosTau2|chr13 (46210019-46208167)
               

               
               11-1872, gnl|Hg17|chr20 (33999283-34001466)
               

               
               11-1872, gnl|Mm7|chr2 (156048611-156050591)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cbl (0.803582)
               

               
               aor (0.390549)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.803582)
               

               
               aor (0.390549)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

	11-1872, gnl\|bosTau2\|chr13 (46210019-46208167)
	11-1872, gnl\|Hg17\|chr20 (33999283-34001466)
	11-1872, gnl\|Mm7\|chr2 (156048611-156050591)

	cbl (0.803582)
	aor (0.390549)
	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	tes (0.207814)
	sag (0.182715)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	spl (0.143184)
	lyg (0.133103)
	kid (0.129735)
	thg (0.126791)