Non-Coding RNA Search

Ss1.1-rcbl0_024147.5

Sequence:


               
               CAGAACTGAAGACATTAACTTAAACTCCCATGAAATGTTCTGGGGGGCTAGCCTAGGTTT
CATCTTTCTTATTTCTTAGGAGTAAAGACATCTGACTCAAAAGTAGTTGTAAAAATAAAC
AGTAAAGGTAAACGATGCATCTTATCAACAAACTATAGGTAGAAAATCTTGGTATTATTC
TTCTAATTCAGAACAGAAACAATATTCAGCATATCATTTGATTTTATTCTACTTTATTCT
TTTTTGGCCACCCTGCAGCATATGAAGTTCCCAGGCCAGGGATCAGATCTGAGCTGCAAG
TGCAGTTGTGACAACACCGGATCCTTTAACCCATTGAGCAGGCTGGGGATCAAAACTGCA
TTCCAGTGCTGTAAAGATGCTTCCAATCCCGTTGGGCCACAGCAGGAATGCCTCAATTTT
CATTATTTTAAAAGAGCCAATGTGGAGTTCCCGTCGTGGCTCAGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAACTGAAGACATTAACTTAAACTCCCATGAAATGTTCTGGGGGGCTAGCCTAGGTTT
CATCTTTCTTATTTCTTAGGAGTAAAGACATCTGACTCAAAAGTAGTTGTAAAAATAAAC
AGTAAAGGTAAACGATGCATCTTATCAACAAACTATAGGTAGAAAATCTTGGTATTATTC
TTCTAATTCAGAACAGAAACAATATTCAGCATATCATTTGATTTTATTCTACTTTATTCT
TTTTTGGCCACCCTGCAGCATATGAAGTTCCCAGGCCAGGGATCAGATCTGAGCTGCAAG
TGCAGTTGTGACAACACCGGATCCTTTAACCCATTGAGCAGGCTGGGGATCAAAACTGCA
TTCCAGTGCTGTAAAGATGCTTCCAATCCCGTTGGGCCACAGCAGGAATGCCTCAATTTT
CATTATTTTAAAAGAGCCAATGTGGAGTTCCCGTCGTGGCTCAGTGAT

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-212, gnl|bosTau2|chrX (38776513-38776729)
               

               
               1-212, gnl|canFam2|chrX (17630938-17631138)
               

               
               1-212, gnl|dasNov1|scaffold_7926 (6591-6797)
               

               
               1-212, gnl|echTel1|scaffold_318902 (5476-5688)
               

               
               1-212, gnl|galGal2|chr1 (112435113-112434874)
               

               
               1-212, gnl|hg17|chrX (21646522-21646737)
               

               
               1-212, gnl|Hg17|chrX (21646768-21646543)
               

               
               1-212, gnl|loxAfr1|scaffold_9666 (33067-33270)
               

               
               1-212, gnl|mm7|chrX (152335661-152335486)
               

               
               1-212, gnl|monDom2|scaffold_48 (11148135-11147945)
               

               
               1-212, gnl|panTro1|chrX (22412963-22413160)
               

               
               1-212, gnl|rheMac2|chrX (19630880-19631093)
               

               
               1-212, gnl|rn3|chrX (58798706-58798864)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-212, gnl|bosTau2|chrX (38776513-38776729)
               

               
               1-212, gnl|canFam2|chrX (17630938-17631138)
               

               
               1-212, gnl|dasNov1|scaffold_7926 (6591-6797)
               

               
               1-212, gnl|echTel1|scaffold_318902 (5476-5688)
               

               
               1-212, gnl|galGal2|chr1 (112435113-112434874)
               

               
               1-212, gnl|hg17|chrX (21646522-21646737)
               

               
               1-212, gnl|Hg17|chrX (21646768-21646543)
               

               
               1-212, gnl|loxAfr1|scaffold_9666 (33067-33270)
               

               
               1-212, gnl|mm7|chrX (152335661-152335486)
               

               
               1-212, gnl|monDom2|scaffold_48 (11148135-11147945)
               

               
               1-212, gnl|panTro1|chrX (22412963-22413160)
               

               
               1-212, gnl|rheMac2|chrX (19630880-19631093)
               

               
               1-212, gnl|rn3|chrX (58798706-58798864)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	1-212, gnl\|bosTau2\|chrX (38776513-38776729)
	1-212, gnl\|canFam2\|chrX (17630938-17631138)
	1-212, gnl\|dasNov1\|scaffold_7926 (6591-6797)
	1-212, gnl\|echTel1\|scaffold_318902 (5476-5688)
	1-212, gnl\|galGal2\|chr1 (112435113-112434874)
	1-212, gnl\|hg17\|chrX (21646522-21646737)
	1-212, gnl\|Hg17\|chrX (21646768-21646543)
	1-212, gnl\|loxAfr1\|scaffold_9666 (33067-33270)
	1-212, gnl\|mm7\|chrX (152335661-152335486)
	1-212, gnl\|monDom2\|scaffold_48 (11148135-11147945)
	1-212, gnl\|panTro1\|chrX (22412963-22413160)
	1-212, gnl\|rheMac2\|chrX (19630880-19631093)
	1-212, gnl\|rn3\|chrX (58798706-58798864)