Non-Coding RNA Search

Ss1.1-rcbl_0118.5

Sequence:


               
               TTCACGTCTCCGCAGACGAAGTCCGCTGTGTAACTCCTTAGAGCAACTCTTTTTGGAAAG
CAAAGTCCCTATTTCTGTACAGTTTTAGGTTAGATGTTTCATTTATAACAAATGCAAAAA
TCAGTTAAGATGAAAGTGATATGTGAAGAAATCTTTTACAGTAAAATATATCCTGAATTC
AGAGAGGTTTGTTCATAATTGAGTCTCTTCTCGAGCTACCTTTTCAACTACATAGACAAT
GTGAAGACAGTGACAGCGTCCTTTTCTCTAGGTGTCTAACCTGTTATTACAAACTGTGAA
AGCAAAGAATTTTATACTTTTACTGATGTTTGTGGTTTTAAACAGTTATTTTCATTCTAA
TCAGTTCTCTCCCCTCTCATTTCTACTAAAGCTGTAAATACATTTAGAAATTATATTTGT
AAATACAGTATATGAAGCCGAGTTAATTTGGGGGTCCATGGAAAGCCTCCCAGTTGGCTT
TGCCTTGGCAGTTTTTTTTTTTTGTTTGTTCGGTTTTTTTGTTTTGTTTTGTTTTGTTTT
GAAATAAACAGAAAGGATACTGTCAGTTCACTGTTAAGCAGAATATACTGTAGAACGAAA
TTGGTAATTTCTGAATCTTCCAGAGCATGAGTAGATGTCTTTTCTGATGATAGCAGTTAA
AACCAAGTCTTTGTTTTTCCCTTAGCCCAGACCATAGGCCTGCATATTTTTGTGTGTGGT
TTTGTTTTTACTTTTGTTTTTGCAGCCTAGATTCTAGGAAGAATTTGCAGGAACACAAAA
CAAGGGCTGGGGGCGGGGCGGGGCGGCGAAAATCATCTATGTGAATGAGCTTTACTTTAA
AGAATAATCCATGTATTTTATTTTAACAATGTTTTCCATTAGTTACTGTGATTTTGTTGT
TGTCGTTGTCATCGTTATTGTTGAATTCTGTAATGGTTTCCTGTGAAGCCTCCACTGAAA
GGGACTCAAATATGCAACACCTAAACTATTTTCCAAGGGCACATGCCCCTTGAATGGTGC
TTCTAGACTGGTCAGGGTTATTTATTAAATTTTATATATGAAAGTATTGGGGAATTATGT
AAATTCTTTATATGAAACTATCTAGTTCATAAATCATAGATTTCATATTACTCAGTGCAA
CTGAACTGAAAGTTCAGAAGAGTCATTCATATTGTTCCAAGTTTGTAATGGTTGTCACAT
GTCACATCTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACGTCTCCGCAGACGAAGTCCGCTGTGTAACTCCTTAGAGCAACTCTTTTTGGAAAG
CAAAGTCCCTATTTCTGTACAGTTTTAGGTTAGATGTTTCATTTATAACAAATGCAAAAA
TCAGTTAAGATGAAAGTGATATGTGAAGAAATCTTTTACAGTAAAATATATCCTGAATTC
AGAGAGGTTTGTTCATAATTGAGTCTCTTCTCGAGCTACCTTTTCAACTACATAGACAAT
GTGAAGACAGTGACAGCGTCCTTTTCTCTAGGTGTCTAACCTGTTATTACAAACTGTGAA
AGCAAAGAATTTTATACTTTTACTGATGTTTGTGGTTTTAAACAGTTATTTTCATTCTAA
TCAGTTCTCTCCCCTCTCATTTCTACTAAAGCTGTAAATACATTTAGAAATTATATTTGT
AAATACAGTATATGAAGCCGAGTTAATTTGGGGGTCCATGGAAAGCCTCCCAGTTGGCTT
TGCCTTGGCAGTTTTTTTTTTTTGTTTGTTCGGTTTTTTTGTTTTGTTTTGTTTTGTTTT
GAAATAAACAGAAAGGATACTGTCAGTTCACTGTTAAGCAGAATATACTGTAGAACGAAA
TTGGTAATTTCTGAATCTTCCAGAGCATGAGTAGATGTCTTTTCTGATGATAGCAGTTAA
AACCAAGTCTTTGTTTTTCCCTTAGCCCAGACCATAGGCCTGCATATTTTTGTGTGTGGT
TTTGTTTTTACTTTTGTTTTTGCAGCCTAGATTCTAGGAAGAATTTGCAGGAACACAAAA
CAAGGGCTGGGGGCGGGGCGGGGCGGCGAAAATCATCTATGTGAATGAGCTTTACTTTAA
AGAATAATCCATGTATTTTATTTTAACAATGTTTTCCATTAGTTACTGTGATTTTGTTGT
TGTCGTTGTCATCGTTATTGTTGAATTCTGTAATGGTTTCCTGTGAAGCCTCCACTGAAA
GGGACTCAAATATGCAACACCTAAACTATTTTCCAAGGGCACATGCCCCTTGAATGGTGC
TTCTAGACTGGTCAGGGTTATTTATTAAATTTTATATATGAAAGTATTGGGGAATTATGT
AAATTCTTTATATGAAACTATCTAGTTCATAAATCATAGATTTCATATTACTCAGTGCAA
CTGAACTGAAAGTTCAGAAGAGTCATTCATATTGTTCCAAGTTTGTAATGGTTGTCACAT
GTCACATCTGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               391-497, + strand, RNAz p=0.926722

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               391-497, + strand, RNAz p=0.926722

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB082524, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB082524, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1212, gnl|bosTau2|chr11 (75073559-75072348)
               

               
               1-1212, gnl|Hg17|chr9 (126725786-126726981)
               

               
               1-1212, gnl|Mm7|chr2 (33415356-33414101)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1212, gnl|bosTau2|chr11 (75073559-75072348)
               

               
               1-1212, gnl|Hg17|chr9 (126725786-126726981)
               

               
               1-1212, gnl|Mm7|chr2 (33415356-33414101)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)
               

               
               csp (0.161186)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               csp (0.161186)
               

               
               cbl (0.114797)

	1-1212, gnl\|bosTau2\|chr11 (75073559-75072348)
	1-1212, gnl\|Hg17\|chr9 (126725786-126726981)
	1-1212, gnl\|Mm7\|chr2 (33415356-33414101)