Non-Coding RNA Search

Ss1.1-rcbr0_001427.5

Sequence:


               
               ATCTAGAACTAGTCGGACTCATCTNCGGGCACAGTCTTTGTGATTCTCGGATTGACTGTT
CTGGCAGTGGGCTTTCTTGTGCCCCCCAAATTGAAGCCTTTGGCGAAGCCAATTTCGTGG
TAGTGGACACGCACGCTGTCCAGTTTAATGGAGCCCTTGACATGTGCAAGCTGGCAGGTG
CCGTTCTCTTCTGCATTGGGGGCATGTCCATGGCAGGGTGCCTGCTGATGTCAGTGTTTG
CCAAAAGCTACTCCAAAGAAGAGAAAATCCTTCAGCAAAAGTTTAAAGAGAGAATTGCAG
ACATCAAGGCCCACCCCCAGCCCATTACGAGAGCTCCAGGCCCAGGGGAAACAAAGATAC
CAGTCACTTTGTCCAGGGTTCAAAATGTTCAGCCTGTATCAGCCACCTGAAATGTTTTCC
ACCCCAGCCTCCCCCCCTCTTCCTAATGTATGAGGTGTTACGAGGGAGCAGGCCAGTTCA
GGAGACGATGAGCGTTTGATGTTGACCTGCCCCGCCTAGGGCTGTGCTCCGCTGCGGGCA
GCATGGGAAGTGAGCTCACATTCATTCCCTTCAGTGGCCCTGGGGACAGTTGATGCCATG
TGTCAGCCTGTCACCTCTGGAACTCCTCTCTCATATATTGTGACTTTGTGTCATTTTCCA
TGTTACTGGAAAGCGCTGAACAGTTTAGACCAGCCTACCGATGGCTAACGTGGTCCGTCT
TACTTTCCAATGTTGGTTCTTCTAATCTTTCCTGTGTGGTGCTGCCTTCCTTTCCTTGTC
TCACTACATGTAAGATACTGTTGTGTGTGTCCACAGAAAAATCACGTTCCCTGATTTTGA
ACCAAACATTGGTCTTTTAACCATAACTTGAGGTTCTTGAGATCAAACACATACCTATCG
GGATTCTCCACAAATCTTTTTGTTGTTGTTGTTTTCTCCAGTTTTTCCTTCCACTTAAAA
AGCTAAAATTGACAACTGGAAAATCTTGGGAAAGAAACTAGTATTAAGAGAATCTATTTA
TGTAGTGTCCAAGAGCACGGAGTTAGAAGCCAAGAAATTTGAGTTCCTATTAGTAACCAG
CTGTGTGATTTTGGGGAAAGCACTTCACCTCCCCAGGCCTCAGTTTTCCCGTCTGTAGCT
GGGGGTCCTGGTCTGTGATGTCGGAGGTTCCTTTTTTGCCGCGTGTCCTCGTGTTTCCAC
GACGAAGAATGTTTACGGTGTTCTTGTGGCTCTCGCCACGGTGGGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTAGAACTAGTCGGACTCATCTNCGGGCACAGTCTTTGTGATTCTCGGATTGACTGTT
CTGGCAGTGGGCTTTCTTGTGCCCCCCAAATTGAAGCCTTTGGCGAAGCCAATTTCGTGG
TAGTGGACACGCACGCTGTCCAGTTTAATGGAGCCCTTGACATGTGCAAGCTGGCAGGTG
CCGTTCTCTTCTGCATTGGGGGCATGTCCATGGCAGGGTGCCTGCTGATGTCAGTGTTTG
CCAAAAGCTACTCCAAAGAAGAGAAAATCCTTCAGCAAAAGTTTAAAGAGAGAATTGCAG
ACATCAAGGCCCACCCCCAGCCCATTACGAGAGCTCCAGGCCCAGGGGAAACAAAGATAC
CAGTCACTTTGTCCAGGGTTCAAAATGTTCAGCCTGTATCAGCCACCTGAAATGTTTTCC
ACCCCAGCCTCCCCCCCTCTTCCTAATGTATGAGGTGTTACGAGGGAGCAGGCCAGTTCA
GGAGACGATGAGCGTTTGATGTTGACCTGCCCCGCCTAGGGCTGTGCTCCGCTGCGGGCA
GCATGGGAAGTGAGCTCACATTCATTCCCTTCAGTGGCCCTGGGGACAGTTGATGCCATG
TGTCAGCCTGTCACCTCTGGAACTCCTCTCTCATATATTGTGACTTTGTGTCATTTTCCA
TGTTACTGGAAAGCGCTGAACAGTTTAGACCAGCCTACCGATGGCTAACGTGGTCCGTCT
TACTTTCCAATGTTGGTTCTTCTAATCTTTCCTGTGTGGTGCTGCCTTCCTTTCCTTGTC
TCACTACATGTAAGATACTGTTGTGTGTGTCCACAGAAAAATCACGTTCCCTGATTTTGA
ACCAAACATTGGTCTTTTAACCATAACTTGAGGTTCTTGAGATCAAACACATACCTATCG
GGATTCTCCACAAATCTTTTTGTTGTTGTTGTTTTCTCCAGTTTTTCCTTCCACTTAAAA
AGCTAAAATTGACAACTGGAAAATCTTGGGAAAGAAACTAGTATTAAGAGAATCTATTTA
TGTAGTGTCCAAGAGCACGGAGTTAGAAGCCAAGAAATTTGAGTTCCTATTAGTAACCAG
CTGTGTGATTTTGGGGAAAGCACTTCACCTCCCCAGGCCTCAGTTTTCCCGTCTGTAGCT
GGGGGTCCTGGTCTGTGATGTCGGAGGTTCCTTTTTTGCCGCGTGTCCTCGTGTTTCCAC
GACGAAGAATGTTTACGGTGTTCTTGTGGCTCTCGCCACGGTGGGATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55625932|ref|XP_518265.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55625932|ref|XP_518265.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               170-329, + strand, RNAz p=0.944929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               170-329, + strand, RNAz p=0.944929

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               12-610, gnl|bosTau2|chr23 (27077385-27076794)
               

               
               12-610, gnl|Hg17|chr6 (24253755-24254345)
               

               
               12-610, gnl|Mm7|chr13 (24619553-24618966)
               


               
               615-1248, gnl|bosTau2|chr23 (27076740-27076109)
               

               
               615-1248, gnl|Hg17|chr6 (24254404-24255249)
               

               
               615-1248, gnl|Mm7|chr13 (24618934-24618330)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-610, gnl|bosTau2|chr23 (27077385-27076794)
               

               
               12-610, gnl|Hg17|chr6 (24253755-24254345)
               

               
               12-610, gnl|Mm7|chr13 (24619553-24618966)
               


               
               615-1248, gnl|bosTau2|chr23 (27076740-27076109)
               

               
               615-1248, gnl|Hg17|chr6 (24254404-24255249)
               

               
               615-1248, gnl|Mm7|chr13 (24618934-24618330)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csk (0.140746)
               

               
               cbr (0.127975)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               cbr (0.127975)

	12-610, gnl\|bosTau2\|chr23 (27077385-27076794)
	12-610, gnl\|Hg17\|chr6 (24253755-24254345)
	12-610, gnl\|Mm7\|chr13 (24619553-24618966)

	615-1248, gnl\|bosTau2\|chr23 (27076740-27076109)
	615-1248, gnl\|Hg17\|chr6 (24254404-24255249)
	615-1248, gnl\|Mm7\|chr13 (24618934-24618330)