Non-Coding RNA Search

Ss1.1-rcbr0_001480.5

Sequence:


               
               GAACTGTACAACAGCCGCAGAGACCTGGACATTAACCGGCCTGGAACAGTGCCCAATGCC
AAGACGCTCCGCTGCCCTGTGATGTTGGTGGTCGGGGATAATGCACCTGCCGAGGATGGG
GTGGTCGAGTGCAACTCCAAACTGGATCCAACCACCACGACCTTCCTGAAGATGGCAGAT
TCCGGGGGGCTCCCCCAGGTCACACAGCCCGGGAAGCTGACTGAAGCCTTCAAATACTTC
CTGCAAGGCATGGGCTACATGCCCTCGGCCAGCATGACCCGTCTTGCCCGCTCTCGCACA
GCGTCCCTCACCAGTGCCAGCTCGGTGGATGGCAGCCGCCCGCAGGCCTGCACCCACTCG
GAGAGCAGTGAGGGGCTGGGCCAGGTCAACCACACCATGGAGGTGTCCTGCTGAAGCCCC
TGGTCCCACAAAGATGCCCCCCTGCTCCCCGCCCGCATTGATGTTCCACTGCCATCTTCA
CATGGCTCATTTCCCCTTTTGTTTTTGTGAGGGTGAAGGGGAGGAAACAGGGTTACGTCT
CCTTTGTTTAAAAAGATGAGGGGCTCCAGCTTAGACGCTGCAGCAGAGCAGTCTCCAGAT
GGTTTGAGGGGCCCACTCCCCCGACCCTGCCCCTGCACTCTCCTGGTTAACTTGGCTAAC
TTAGTCCCTCTCTCCCACATCCCCACGGCCCAGGCACAGTCAGGGCAGGGTTCCTGGGAG
GAAGGGGATTAGCTAAGGAGAGGCTTTGAGTCCTTCTCTGGCCAGGATCCAGGGTAATAT
TCTGGATTAAAGAAAGCATGGGTTGACTCCCTGGGAAGGAGAGGTTTGAAGAAGGGATAG
GGTTTTGAGGGGGTGGGTTCTGGGACAGCAGGAGCACGGGGTCCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTGTACAACAGCCGCAGAGACCTGGACATTAACCGGCCTGGAACAGTGCCCAATGCC
AAGACGCTCCGCTGCCCTGTGATGTTGGTGGTCGGGGATAATGCACCTGCCGAGGATGGG
GTGGTCGAGTGCAACTCCAAACTGGATCCAACCACCACGACCTTCCTGAAGATGGCAGAT
TCCGGGGGGCTCCCCCAGGTCACACAGCCCGGGAAGCTGACTGAAGCCTTCAAATACTTC
CTGCAAGGCATGGGCTACATGCCCTCGGCCAGCATGACCCGTCTTGCCCGCTCTCGCACA
GCGTCCCTCACCAGTGCCAGCTCGGTGGATGGCAGCCGCCCGCAGGCCTGCACCCACTCG
GAGAGCAGTGAGGGGCTGGGCCAGGTCAACCACACCATGGAGGTGTCCTGCTGAAGCCCC
TGGTCCCACAAAGATGCCCCCCTGCTCCCCGCCCGCATTGATGTTCCACTGCCATCTTCA
CATGGCTCATTTCCCCTTTTGTTTTTGTGAGGGTGAAGGGGAGGAAACAGGGTTACGTCT
CCTTTGTTTAAAAAGATGAGGGGCTCCAGCTTAGACGCTGCAGCAGAGCAGTCTCCAGAT
GGTTTGAGGGGCCCACTCCCCCGACCCTGCCCCTGCACTCTCCTGGTTAACTTGGCTAAC
TTAGTCCCTCTCTCCCACATCCCCACGGCCCAGGCACAGTCAGGGCAGGGTTCCTGGGAG
GAAGGGGATTAGCTAAGGAGAGGCTTTGAGTCCTTCTCTGGCCAGGATCCAGGGTAATAT
TCTGGATTAAAGAAAGCATGGGTTGACTCCCTGGGAAGGAGAGGTTTGAAGAAGGGATAG
GGTTTTGAGGGGGTGGGTTCTGGGACAGCAGGAGCACGGGGTCCAGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               339-457, - strand, RNAz p=0.555643
               

               
               497-848, + strand, RNAz p=0.985035

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-457, - strand, RNAz p=0.555643
               

               
               497-848, + strand, RNAz p=0.985035

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               659-746, + strand, RNAmicro p=0.973506

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               659-746, + strand, RNAmicro p=0.973506

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               260-888, gnl|bosTau2|chr18 (23194875-23195505)
               

               
               260-888, gnl|Hg17|chr16 (57102827-57103377)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               260-888, gnl|bosTau2|chr18 (23194875-23195505)
               

               
               260-888, gnl|Hg17|chr16 (57102827-57103377)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.127975)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)

	339-457, - strand, RNAz p=0.555643
	497-848, + strand, RNAz p=0.985035

	260-888, gnl\|bosTau2\|chr18 (23194875-23195505)
	260-888, gnl\|Hg17\|chr16 (57102827-57103377)