Ss1.1-rcbr0_002005.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCATAGCTAGTGTTGGCTAGGCAGAATAGTATGGAGGATGTTAGTCCGTGGGCAATTA TGAGAGCTGTGGCTCCTATGAAGCTTCAGGGGGTTTGAATTATGATTGCTACGATTACAA GTGCTATATGACTTACTGATGAATGGGCGATTAAGGAAAATGTGGAAATGGCCGCTCACT TAGGCTAACACAGCACAGATTCTAATTAGGGTTTGCACTGGCTCCTTGCTGCTCTGGCAT GGCTCCGCAGCTGCCCTCCGTGCCCTAGCTCTAATAATTTCTGAAAACTCAAAGAGGAGA GGCAGATAAACAAGCCTCCCTGGGATCAATAGAAGAAGGAACTCCAAGGCTGATGGTAAA GCTTCGTAAGGATGATGCCAAAAGGGAACTGGGGTCTCCATGGTGATAAGAGGCCGGGGA CCAATGGGAGCTGAAGGCGGAGCAGGACCTGTGGGGAAGACTCATGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCATAGCTAGTGTTGGCTAGGCAGAATAGTATGGAGGATGTTAGTCCGTGGGCAATTA TGAGAGCTGTGGCTCCTATGAAGCTTCAGGGGGTTTGAATTATGATTGCTACGATTACAA GTGCTATATGACTTACTGATGAATGGGCGATTAAGGAAAATGTGGAAATGGCCGCTCACT TAGGCTAACACAGCACAGATTCTAATTAGGGTTTGCACTGGCTCCTTGCTGCTCTGGCAT GGCTCCGCAGCTGCCCTCCGTGCCCTAGCTCTAATAATTTCTGAAAACTCAAAGAGGAGA GGCAGATAAACAAGCCTCCCTGGGATCAATAGAAGAAGGAACTCCAAGGCTGATGGTAAA GCTTCGTAAGGATGATGCCAAAAGGGAACTGGGGTCTCCATGGTGATAAGAGGCCGGGGA CCAATGGGAGCTGAAGGCGGAGCAGGACCTGTGGGGAAGACTCATGGG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 177-281, - strand, RNAz p=0.987911 | |
| 273-468, - strand, RNAz p=0.877845 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 177-281, - strand, RNAz p=0.987911 | |
| 273-468, - strand, RNAz p=0.877845 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 3-151, gnl|bosTau2|chrM (11532-11384) | |
| 3-151, gnl|canFam2|chrM (10932-11150) | |
| 3-151, gnl|danRer3|chrM (12033-12259) | |
| 3-151, gnl|dasNov1|scaffold_23239 (2253-2035) | |
| 3-151, gnl|echTel1|scaffold_181343 (10305-10523) | |
| 3-151, gnl|galGal2|chrM (12217-12435) | |
| 3-151, gnl|hg17|chr6 (154082871-154083097) | |
| 3-151, gnl|Hg17|chrM (11764-11616) | |
| 3-151, gnl|loxAfr1|scaffold_36650 (13898-14103) | |
| 3-151, gnl|mm7|chrM (10898-11105) | |
| 3-151, gnl|Mm7|chrM (11170-11022) | |
| 3-151, gnl|monDom2|scaffold_1308 (628-410) | |
| 3-151, gnl|oryCun1|scaffold_140182 (11063-11281) | |
| 3-151, gnl|panTro1|chr5 (157611063-157611289) | |
| 3-151, gnl|rheMac2|chr4 (109322173-109321968) | |
| 3-151, gnl|rn3|chr18 (33046950-33047158) | |
| 3-151, gnl|xenTro1|scaffold_25113 (2229-2023) | |
| 157-468, gnl|bosTau2|chr3 (29965997-29965686) | |
| 157-468, gnl|canFam2|chr6 (44478428-44477950) | |
| 157-468, gnl|dasNov1|scaffold_21560 (50101-49624) | |
| 157-468, gnl|echTel1|scaffold_322291 (16633-16164) | |
| 157-468, gnl|galGal2|chr26 (135807-136271) | |
| 157-468, gnl|hg17|chr1 (110848417-110848891) | |
| 157-468, gnl|Hg17|chr1 (110848978-110848637) | |
| 157-468, gnl|mm7|chr3 (106933122-106932628) | |
| 157-468, gnl|Mm7|chr3 (106932574-106932900) | |
| 157-468, gnl|monDom2|scaffold_0 (5385740-5385257) | |
| 157-468, gnl|oryCun1|scaffold_204098 (39765-40263) | |
| 157-468, gnl|panTro1|chr1_random (5206248-5206722) | |
| 157-468, gnl|rheMac2|chr1 (113654891-113655365) | |
| 157-468, gnl|rn3|chr2 (202535810-202535319) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-151, gnl|bosTau2|chrM (11532-11384) | |
| 3-151, gnl|canFam2|chrM (10932-11150) | |
| 3-151, gnl|danRer3|chrM (12033-12259) | |
| 3-151, gnl|dasNov1|scaffold_23239 (2253-2035) | |
| 3-151, gnl|echTel1|scaffold_181343 (10305-10523) | |
| 3-151, gnl|galGal2|chrM (12217-12435) | |
| 3-151, gnl|hg17|chr6 (154082871-154083097) | |
| 3-151, gnl|Hg17|chrM (11764-11616) | |
| 3-151, gnl|loxAfr1|scaffold_36650 (13898-14103) | |
| 3-151, gnl|mm7|chrM (10898-11105) | |
| 3-151, gnl|Mm7|chrM (11170-11022) | |
| 3-151, gnl|monDom2|scaffold_1308 (628-410) | |
| 3-151, gnl|oryCun1|scaffold_140182 (11063-11281) | |
| 3-151, gnl|panTro1|chr5 (157611063-157611289) | |
| 3-151, gnl|rheMac2|chr4 (109322173-109321968) | |
| 3-151, gnl|rn3|chr18 (33046950-33047158) | |
| 3-151, gnl|xenTro1|scaffold_25113 (2229-2023) | |
| 157-468, gnl|bosTau2|chr3 (29965997-29965686) | |
| 157-468, gnl|canFam2|chr6 (44478428-44477950) | |
| 157-468, gnl|dasNov1|scaffold_21560 (50101-49624) | |
| 157-468, gnl|echTel1|scaffold_322291 (16633-16164) | |
| 157-468, gnl|galGal2|chr26 (135807-136271) | |
| 157-468, gnl|hg17|chr1 (110848417-110848891) | |
| 157-468, gnl|Hg17|chr1 (110848978-110848637) | |
| 157-468, gnl|mm7|chr3 (106933122-106932628) | |
| 157-468, gnl|Mm7|chr3 (106932574-106932900) | |
| 157-468, gnl|monDom2|scaffold_0 (5385740-5385257) | |
| 157-468, gnl|oryCun1|scaffold_204098 (39765-40263) | |
| 157-468, gnl|panTro1|chr1_random (5206248-5206722) | |
| 157-468, gnl|rheMac2|chr1 (113654891-113655365) | |
| 157-468, gnl|rn3|chr2 (202535810-202535319) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.255951) |