Non-Coding RNA Search

Ss1.1-rcbr0_002204.5

Sequence:


               
               CCTTAAAACACACACAGAGCAAACCCTTTCATAAGGCCCTCCTATCCACGGGCAGCCCCC
ATTCACATCAGGGTCTCCATGTGTACTGCCAAAGTCAATTATGTCTTAAAGCCTTTGATG
GATGTTACGGGGCAAAGTTATGCTTTAAACAGAAGCTACTGCCAAATCTGTGGTGAAAGC
ACTATTTCCAGTGAAATACTGAATAACACCATTGGGAATTACTGAAAACAAAGGCTTTTC
TATAGGAGTCTTCTCCATGGCATGTTTTTTGGTTTGTTAGCCATAGAAACTAGGCATCAG
AATTCATGAGCAAGAATACATGATATTTTCTTTGGCCCTAAAATACTGAAATTTTCACAA
AGGGCTTTAAAAAAATTTTTGGAATAACTTTTTGGATAGCATATTGGGCGATTATGACGT
GGGAATTTAACAGAACTCAAATCCACAGCTCTCAAATCAAGATACTTAAATGGTAAATTC
TTGGTAAGTAAATACGTTCATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTAAAACACACACAGAGCAAACCCTTTCATAAGGCCCTCCTATCCACGGGCAGCCCCC
ATTCACATCAGGGTCTCCATGTGTACTGCCAAAGTCAATTATGTCTTAAAGCCTTTGATG
GATGTTACGGGGCAAAGTTATGCTTTAAACAGAAGCTACTGCCAAATCTGTGGTGAAAGC
ACTATTTCCAGTGAAATACTGAATAACACCATTGGGAATTACTGAAAACAAAGGCTTTTC
TATAGGAGTCTTCTCCATGGCATGTTTTTTGGTTTGTTAGCCATAGAAACTAGGCATCAG
AATTCATGAGCAAGAATACATGATATTTTCTTTGGCCCTAAAATACTGAAATTTTCACAA
AGGGCTTTAAAAAAATTTTTGGAATAACTTTTTGGATAGCATATTGGGCGATTATGACGT
GGGAATTTAACAGAACTCAAATCCACAGCTCTCAAATCAAGATACTTAAATGGTAAATTC
TTGGTAAGTAAATACGTTCATATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11359968|pir||T46307

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11359968|pir||T46307

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               5-292, gnl|bosTau2|chr14 (50045089-50045377)
               

               
               5-292, gnl|canFam2|chr13 (21775506-21776021)
               

               
               5-292, gnl|dasNov1|scaffold_90606 (2563-3053)
               

               
               5-292, gnl|echTel1|scaffold_319804 (21013-21522)
               

               
               5-292, gnl|galGal2|chr2 (147219352-147218817)
               

               
               5-292, gnl|hg17|chr8 (120812506-120813036)
               

               
               5-292, gnl|Hg17|chr8 (120813108-120812769)
               

               
               5-292, gnl|loxAfr1|scaffold_86285 (1517-2077)
               

               
               5-292, gnl|mm7|chr15 (55075760-55076256)
               

               
               5-292, gnl|Mm7|chr15 (55076315-55076050)
               

               
               5-292, gnl|monDom2|scaffold_3 (36031586-36030988)
               

               
               5-292, gnl|oryCun1|scaffold_149377 (7154-6633)
               

               
               5-292, gnl|panTro1|chr7 (123444735-123445265)
               

               
               5-292, gnl|rheMac2|chr8 (122230148-122230671)
               

               
               5-292, gnl|rn3|chr7 (91577135-91577632)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-292, gnl|bosTau2|chr14 (50045089-50045377)
               

               
               5-292, gnl|canFam2|chr13 (21775506-21776021)
               

               
               5-292, gnl|dasNov1|scaffold_90606 (2563-3053)
               

               
               5-292, gnl|echTel1|scaffold_319804 (21013-21522)
               

               
               5-292, gnl|galGal2|chr2 (147219352-147218817)
               

               
               5-292, gnl|hg17|chr8 (120812506-120813036)
               

               
               5-292, gnl|Hg17|chr8 (120813108-120812769)
               

               
               5-292, gnl|loxAfr1|scaffold_86285 (1517-2077)
               

               
               5-292, gnl|mm7|chr15 (55075760-55076256)
               

               
               5-292, gnl|Mm7|chr15 (55076315-55076050)
               

               
               5-292, gnl|monDom2|scaffold_3 (36031586-36030988)
               

               
               5-292, gnl|oryCun1|scaffold_149377 (7154-6633)
               

               
               5-292, gnl|panTro1|chr7 (123444735-123445265)
               

               
               5-292, gnl|rheMac2|chr8 (122230148-122230671)
               

               
               5-292, gnl|rn3|chr7 (91577135-91577632)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.639877)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.639877)

	5-292, gnl\|bosTau2\|chr14 (50045089-50045377)
	5-292, gnl\|canFam2\|chr13 (21775506-21776021)
	5-292, gnl\|dasNov1\|scaffold_90606 (2563-3053)
	5-292, gnl\|echTel1\|scaffold_319804 (21013-21522)
	5-292, gnl\|galGal2\|chr2 (147219352-147218817)
	5-292, gnl\|hg17\|chr8 (120812506-120813036)
	5-292, gnl\|Hg17\|chr8 (120813108-120812769)
	5-292, gnl\|loxAfr1\|scaffold_86285 (1517-2077)
	5-292, gnl\|mm7\|chr15 (55075760-55076256)
	5-292, gnl\|Mm7\|chr15 (55076315-55076050)
	5-292, gnl\|monDom2\|scaffold_3 (36031586-36030988)
	5-292, gnl\|oryCun1\|scaffold_149377 (7154-6633)
	5-292, gnl\|panTro1\|chr7 (123444735-123445265)
	5-292, gnl\|rheMac2\|chr8 (122230148-122230671)
	5-292, gnl\|rn3\|chr7 (91577135-91577632)