Non-Coding RNA Search

Ss1.1-rcbr0_003424.5.5

Sequence:


               
               GTGAAGTCCATTGTAACTGTATTTAAACTTGACTTGGCAACATAATATGTTCTAAATCTC
AACACAGAGAAGCGTGGCAATACATTCTTAAGGGTAGTATAAAAGAAGCACTTTTTGAAT
CTGTGTGATAAAGTTTGGAATCAGGGAGGGACGTCTTATTTCTCCTCCCTTTTTGTGCTT
GTCTGTAGGAACTGGTTCAGGATTTTTTGCTTTTTTGTTTTAAATGTAAATCGATAGTCT
TTTATAAGTAGCAAATGGAAACATATTGGGTGCCTTTGTTTGTAAACCAAAAAGTAATAA
ATGAATCCCTATATTTCCATTATAGTATTTATTGTATTTTTACAATAATTATCCTGAAAA
TTACCCATGAGGTAATGTGGTTAGGATTGCAGGAAACAGTTCTCACTTACTCTTCTTACC
TTTTTTAGGTATACTCATTACTTTCTGTATCCTAATTTTATTTAATTCTAAGTCTCTTAC
ACAGCATTTTAGGGGAAGCCTGTAGGCAGGATGAGTACTTTTTGTTGAGGAATTACTTTT
ATGTATTAGCTGGAATGAAGTAGTTCTTCTAAAAAAAACATTACCAGGAGACTGCCATGG
TATCATTAAGCTCCAGCTACTCTCCTCCACATCCAATGATATTAATTTATAAATATATTT
GCTGTAATTTATCTGTTGAATACGTATAAGGAATCATTAATAGAGAGAAACTGTAAAAAA
AGGAGAGAGCCTATATCAGGCTGGGGTACAGGTGAATATAAATGGCCTTCCAAGCAAGCT
CTTTAGGACTGACTCCAACCCCTGACCTGAAACTATTAGCACTGACTTGGTCTCTTTGAG
AAAAACTCTCTAATCTTTTGCATAAGGAACTAGAGAAAAGAATGTATACTGCATAACTTG
ATATAGAAATGAGTTAATTAAATTTACAGTCTCTGATAAAAGAAATATGAAATATTTTCT
AATTGAATTAATATTTTTATCTTGAGGCATTTTCTAGTCATAGAATGAATGTCTTTTTTA
AAATGGTGGTACTCTTAGCATACATCGTCTCTGCTACCCTTGAGATTCCTAAACAAATCA
TCTTTGTCATTTGAGCATAGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAGTCCATTGTAACTGTATTTAAACTTGACTTGGCAACATAATATGTTCTAAATCTC
AACACAGAGAAGCGTGGCAATACATTCTTAAGGGTAGTATAAAAGAAGCACTTTTTGAAT
CTGTGTGATAAAGTTTGGAATCAGGGAGGGACGTCTTATTTCTCCTCCCTTTTTGTGCTT
GTCTGTAGGAACTGGTTCAGGATTTTTTGCTTTTTTGTTTTAAATGTAAATCGATAGTCT
TTTATAAGTAGCAAATGGAAACATATTGGGTGCCTTTGTTTGTAAACCAAAAAGTAATAA
ATGAATCCCTATATTTCCATTATAGTATTTATTGTATTTTTACAATAATTATCCTGAAAA
TTACCCATGAGGTAATGTGGTTAGGATTGCAGGAAACAGTTCTCACTTACTCTTCTTACC
TTTTTTAGGTATACTCATTACTTTCTGTATCCTAATTTTATTTAATTCTAAGTCTCTTAC
ACAGCATTTTAGGGGAAGCCTGTAGGCAGGATGAGTACTTTTTGTTGAGGAATTACTTTT
ATGTATTAGCTGGAATGAAGTAGTTCTTCTAAAAAAAACATTACCAGGAGACTGCCATGG
TATCATTAAGCTCCAGCTACTCTCCTCCACATCCAATGATATTAATTTATAAATATATTT
GCTGTAATTTATCTGTTGAATACGTATAAGGAATCATTAATAGAGAGAAACTGTAAAAAA
AGGAGAGAGCCTATATCAGGCTGGGGTACAGGTGAATATAAATGGCCTTCCAAGCAAGCT
CTTTAGGACTGACTCCAACCCCTGACCTGAAACTATTAGCACTGACTTGGTCTCTTTGAG
AAAAACTCTCTAATCTTTTGCATAAGGAACTAGAGAAAAGAATGTATACTGCATAACTTG
ATATAGAAATGAGTTAATTAAATTTACAGTCTCTGATAAAAGAAATATGAAATATTTTCT
AATTGAATTAATATTTTTATCTTGAGGCATTTTCTAGTCATAGAATGAATGTCTTTTTTA
AAATGGTGGTACTCTTAGCATACATCGTCTCTGCTACCCTTGAGATTCCTAAACAAATCA
TCTTTGTCATTTGAGCATAGTTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-212, + strand, RNAz p=0.997169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-212, + strand, RNAz p=0.997169

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032228, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032228, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1104, gnl|bosTau2|chr15 (25274864-25275961)
               

               
               1-1104, gnl|Hg17|chr11 (13709293-13710426)
               

               
               1-1104, gnl|Mm7|chr7 (109486572-109487517)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1104, gnl|bosTau2|chr15 (25274864-25275961)
               

               
               1-1104, gnl|Hg17|chr11 (13709293-13710426)
               

               
               1-1104, gnl|Mm7|chr7 (109486572-109487517)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cbr (1.40773)
               

               
               aor (0.585823)
               

               
               ret (0.3862)
               

               
               hyp (0.285673)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.40773)
               

               
               aor (0.585823)
               

               
               ret (0.3862)
               

               
               hyp (0.285673)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)

	1-1104, gnl\|bosTau2\|chr15 (25274864-25275961)
	1-1104, gnl\|Hg17\|chr11 (13709293-13710426)
	1-1104, gnl\|Mm7\|chr7 (109486572-109487517)

	cbr (1.40773)
	aor (0.585823)
	ret (0.3862)
	hyp (0.285673)
	fcc (0.197785)
	col (0.195008)
	fbs (0.175346)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	pty (0.142714)
	sug (0.127291)
	bla (0.124347)
	nbm (0.0993246)