Non-Coding RNA Search

Ss1.1-rcbr0_003576.5

Sequence:


               
               TACGTTAAAGAGTGTTTCCAAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGA
AGAAGAGGAGGAAGAAGGCAGTGTTGTAGATGAGGCAGAAATGGATCTTGAAGAAGGTGA
TGGCGACGTGAGTGCGGAGGAAGACCTGGCAGCAGAGTCTGCAGACACGCGCGAGAGGGG
GCCCTTACCTGCTGACCCTGCAGGAAAAGATGGGCACGGGCTACCTGGCACATCACAGGA
ATCCCCCGAGGAGTTTACAGACGTGAAACACGAGTCACTCTTCAGCTTAGAAACCAATTT
TCTTGAAGAGGAAAGTGGAGGCCACACTTCTCTGAACGCATCACAAGATCCATTTGTACA
GCATGTGCACAAAGAACTGAAAGAAAAAGAAATCCAGGCTGTTGCCACAAATCCCAAAAC
TACTCATGAGCTAAAATGGCCCATCCTGGGCCAGCTTGTCTTTTCATCCAAGTTTCAGAA
GTTGGAAACCTTTAAACCTCCAAAGGACATTGACTTAAAGTCGCTTCATCTCCAGAAGCC
TCTGGAATCCACCTGGACCAAGACCAACAGCCAGTTCCTCTCAGGTTCCCAAAAATCAGG
CAGCCCTTTCACACCTCTCCAGAAAGAGCTCTTCTTAATTATGAATTCTTACCGGGACCT
GTTCTACCCCGAAAGGACCGCCCTGAAGAACGGGGAAGAGATCCGCCACGTGTACTGCCT
GCATGCGATAAATCACGTCCTCAAAGCCAATGCCCAGGTGCTTGGCAACAACAGCAGACG
CCGAAGCCAGAAACTTGGGGTGGGTGACGATGATGACTTCAGGGACCAGGGGCTGACAAG
GCCCAAGGTGCTGATAGTGGTGCCCTTCCGGGAAGCTGCCCTGCGGGTGGTGCAGCTCTT
CATCAGCCTCCTTGAGGGCGACAGCAAGAAGCAAATAATTGTAAGCAACAAAAAGAGGTT
TAATGGAGAGTATGGCTCAGATCCGGAGGAGAGACCACCCAACCTGAAGAGGCCTGAGGA
TTATGAAGCTGTGTTTGTTGGCAACATCGACGACCACTTCAGAATCGGAGTGGCCATACT
GCAGAGGAGCATCCGCCTTTACGCCCCCTTCTACTCTTCCGACATCCTCATCGCCTCCCC
TCTGGGCCTGAGGACCATCCTTGGTGGAGAAGGAGAGAAGAAGAGAGATTTTGACTTTCT
GTCTTCTATTGAGCTTCTCATCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACGTTAAAGAGTGTTTCCAAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGA
AGAAGAGGAGGAAGAAGGCAGTGTTGTAGATGAGGCAGAAATGGATCTTGAAGAAGGTGA
TGGCGACGTGAGTGCGGAGGAAGACCTGGCAGCAGAGTCTGCAGACACGCGCGAGAGGGG
GCCCTTACCTGCTGACCCTGCAGGAAAAGATGGGCACGGGCTACCTGGCACATCACAGGA
ATCCCCCGAGGAGTTTACAGACGTGAAACACGAGTCACTCTTCAGCTTAGAAACCAATTT
TCTTGAAGAGGAAAGTGGAGGCCACACTTCTCTGAACGCATCACAAGATCCATTTGTACA
GCATGTGCACAAAGAACTGAAAGAAAAAGAAATCCAGGCTGTTGCCACAAATCCCAAAAC
TACTCATGAGCTAAAATGGCCCATCCTGGGCCAGCTTGTCTTTTCATCCAAGTTTCAGAA
GTTGGAAACCTTTAAACCTCCAAAGGACATTGACTTAAAGTCGCTTCATCTCCAGAAGCC
TCTGGAATCCACCTGGACCAAGACCAACAGCCAGTTCCTCTCAGGTTCCCAAAAATCAGG
CAGCCCTTTCACACCTCTCCAGAAAGAGCTCTTCTTAATTATGAATTCTTACCGGGACCT
GTTCTACCCCGAAAGGACCGCCCTGAAGAACGGGGAAGAGATCCGCCACGTGTACTGCCT
GCATGCGATAAATCACGTCCTCAAAGCCAATGCCCAGGTGCTTGGCAACAACAGCAGACG
CCGAAGCCAGAAACTTGGGGTGGGTGACGATGATGACTTCAGGGACCAGGGGCTGACAAG
GCCCAAGGTGCTGATAGTGGTGCCCTTCCGGGAAGCTGCCCTGCGGGTGGTGCAGCTCTT
CATCAGCCTCCTTGAGGGCGACAGCAAGAAGCAAATAATTGTAAGCAACAAAAAGAGGTT
TAATGGAGAGTATGGCTCAGATCCGGAGGAGAGACCACCCAACCTGAAGAGGCCTGAGGA
TTATGAAGCTGTGTTTGTTGGCAACATCGACGACCACTTCAGAATCGGAGTGGCCATACT
GCAGAGGAGCATCCGCCTTTACGCCCCCTTCTACTCTTCCGACATCCTCATCGCCTCCCC
TCTGGGCCTGAGGACCATCCTTGGTGGAGAAGGAGAGAAGAAGAGAGATTTTGACTTTCT
GTCTTCTATTGAGCTTCTCATCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51491238|emb|CAH18684.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51491238|emb|CAH18684.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               437-1224, - strand, RNAz p=0.951884

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               437-1224, - strand, RNAz p=0.951884

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               42-170, gnl|bosTau2|chr16 (50862818-50862943)
               

               
               42-170, gnl|Hg17|chr1 (206392646-206392778)
               

               
               42-170, gnl|Mm7|chr1 (192681062-192680892)
               


               
               183-350, gnl|bosTau2|chr16 (50864943-50865110)
               

               
               183-350, gnl|Hg17|chr1 (206394931-206395101)
               

               
               183-350, gnl|Mm7|chr1 (192676421-192676254)
               


               
               437-850, gnl|bosTau2|chr16 (50868504-50868917)
               

               
               437-850, gnl|Hg17|chr1 (206398541-206398954)
               

               
               437-850, gnl|Mm7|chr1 (192673339-192672926)
               


               
               1067-1224, gnl|bosTau2|chr16 (50876850-50877007)
               

               
               1067-1224, gnl|Hg17|chr1 (206402592-206402749)
               

               
               1067-1224, gnl|Mm7|chr1 (192670323-192670166)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-170, gnl|bosTau2|chr16 (50862818-50862943)
               

               
               42-170, gnl|Hg17|chr1 (206392646-206392778)
               

               
               42-170, gnl|Mm7|chr1 (192681062-192680892)
               


               
               183-350, gnl|bosTau2|chr16 (50864943-50865110)
               

               
               183-350, gnl|Hg17|chr1 (206394931-206395101)
               

               
               183-350, gnl|Mm7|chr1 (192676421-192676254)
               


               
               437-850, gnl|bosTau2|chr16 (50868504-50868917)
               

               
               437-850, gnl|Hg17|chr1 (206398541-206398954)
               

               
               437-850, gnl|Mm7|chr1 (192673339-192672926)
               


               
               1067-1224, gnl|bosTau2|chr16 (50876850-50877007)
               

               
               1067-1224, gnl|Hg17|chr1 (206402592-206402749)
               

               
               1067-1224, gnl|Mm7|chr1 (192670323-192670166)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.767853)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.767853)

	42-170, gnl\|bosTau2\|chr16 (50862818-50862943)
	42-170, gnl\|Hg17\|chr1 (206392646-206392778)
	42-170, gnl\|Mm7\|chr1 (192681062-192680892)

	183-350, gnl\|bosTau2\|chr16 (50864943-50865110)
	183-350, gnl\|Hg17\|chr1 (206394931-206395101)
	183-350, gnl\|Mm7\|chr1 (192676421-192676254)

	437-850, gnl\|bosTau2\|chr16 (50868504-50868917)
	437-850, gnl\|Hg17\|chr1 (206398541-206398954)
	437-850, gnl\|Mm7\|chr1 (192673339-192672926)

	1067-1224, gnl\|bosTau2\|chr16 (50876850-50877007)
	1067-1224, gnl\|Hg17\|chr1 (206402592-206402749)
	1067-1224, gnl\|Mm7\|chr1 (192670323-192670166)