Non-Coding RNA Search

Ss1.1-rcbr0_003629.5

Sequence:


               
               GACCCTTACTAGTCCTTCTTGATCCTGAAGTGGAATAGGTGCCGCTGTTGCTGCTCGTGC
TGAGTCTAGAGCCGCAGCCGGACATGGGGCTGGAGGACGAGCAAAGGATGCTGACCGGGT
CTGGAGATCCCAAGGAGGAGGAAGAGGAGGAGGAAGAATTAGTGGATCCTCTAACAACAG
TGAGAGAGCAATGCGAGCAGATAGAGAAATGTATAAAGGCTCGGGAGCGGCTGGAGCTCT
GTGATCAGCGGGTATCCTCCAGGTCACAGACGGAGGAGGATTGCACAGAGGAGCTCTTTG
ACTTCCTGCATGCAAGAGACCACTGCGTAGCCCACAAACTCTTTAACAGCTTGAAATAAA
TGTGCAGATTCCTTCACCCCAGCCTTCAGCACTTGGGCATCAGGATGTTTCCTTATGGTT
TTGGACATGCCATTTGTTTCGTATTTGTGTAACTAAGTTCTTGTGGACCTCAAGGATTTT
GGCATAGGCAAGTAGCATCTATGTAATTATCAGTGATTGCATCTTAATAAAGTCCAGTGA
TCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCTTACTAGTCCTTCTTGATCCTGAAGTGGAATAGGTGCCGCTGTTGCTGCTCGTGC
TGAGTCTAGAGCCGCAGCCGGACATGGGGCTGGAGGACGAGCAAAGGATGCTGACCGGGT
CTGGAGATCCCAAGGAGGAGGAAGAGGAGGAGGAAGAATTAGTGGATCCTCTAACAACAG
TGAGAGAGCAATGCGAGCAGATAGAGAAATGTATAAAGGCTCGGGAGCGGCTGGAGCTCT
GTGATCAGCGGGTATCCTCCAGGTCACAGACGGAGGAGGATTGCACAGAGGAGCTCTTTG
ACTTCCTGCATGCAAGAGACCACTGCGTAGCCCACAAACTCTTTAACAGCTTGAAATAAA
TGTGCAGATTCCTTCACCCCAGCCTTCAGCACTTGGGCATCAGGATGTTTCCTTATGGTT
TTGGACATGCCATTTGTTTCGTATTTGTGTAACTAAGTTCTTGTGGACCTCAAGGATTTT
GGCATAGGCAAGTAGCATCTATGTAATTATCAGTGATTGCATCTTAATAAAGTCCAGTGA
TCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3660383|pdb|3BCC|H

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3660383|pdb|3BCC|H

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               44-561, gnl|bosTau2|chr18 (38683808-38684302)
               

               
               44-561, gnl|Hg17|chr1 (15879496-15878970)
               

               
               44-561, gnl|Mm7|chr2 (118749018-118749510)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-561, gnl|bosTau2|chr18 (38683808-38684302)
               

               
               44-561, gnl|Hg17|chr1 (15879496-15878970)
               

               
               44-561, gnl|Mm7|chr2 (118749018-118749510)

Expressed library(ies): 62 entry(ies)

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Expressed library(ies): 62 entry(ies)

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               cbr (5.63092)
               

               
               hlv (1.81033)
               

               
               col (1.56006)
               

               
               nep (1.4714)
               

               
               che (1.22683)
               

               
               nco (1.13214)
               

               
               ssp (1.08416)
               

               
               nms (1.06929)
               

               
               hea (1.02249)
               

               
               cje (0.826173)
               

               
               cbe (0.717703)
               

               
               fbs (0.701385)
               

               
               eje (0.691836)
               

               
               vin (0.665115)
               

               
               pgl (0.592417)
               

               
               pty (0.570858)
               

               
               mgm (0.541028)
               

               
               nmm (0.531209)
               

               
               ton (0.526501)
               

               
               sin (0.524843)
               

               
               duo (0.518403)
               

               
               nje (0.49776)
               

               
               bla (0.497389)
               

               
               jej (0.494609)
               

               
               med (0.465008)
               

               
               isp (0.451128)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               sto (0.359648)
               

               
               ill (0.351185)
               

               
               ecc (0.345105)
               

               
               mga (0.32041)
               

               
               bfe (0.299715)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 62 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (5.63092)
               

               
               hlv (1.81033)
               

               
               col (1.56006)
               

               
               nep (1.4714)
               

               
               che (1.22683)
               

               
               nco (1.13214)
               

               
               ssp (1.08416)
               

               
               nms (1.06929)
               

               
               hea (1.02249)
               

               
               cje (0.826173)
               

               
               cbe (0.717703)
               

               
               fbs (0.701385)
               

               
               eje (0.691836)
               

               
               vin (0.665115)
               

               
               pgl (0.592417)
               

               
               pty (0.570858)
               

               
               mgm (0.541028)
               

               
               nmm (0.531209)
               

               
               ton (0.526501)
               

               
               sin (0.524843)
               

               
               duo (0.518403)
               

               
               nje (0.49776)
               

               
               bla (0.497389)
               

               
               jej (0.494609)
               

               
               med (0.465008)
               

               
               isp (0.451128)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               sto (0.359648)
               

               
               ill (0.351185)
               

               
               ecc (0.345105)
               

               
               mga (0.32041)
               

               
               bfe (0.299715)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	44-561, gnl\|bosTau2\|chr18 (38683808-38684302)
	44-561, gnl\|Hg17\|chr1 (15879496-15878970)
	44-561, gnl\|Mm7\|chr2 (118749018-118749510)

	cbr (5.63092)
	hlv (1.81033)
	col (1.56006)
	nep (1.4714)
	che (1.22683)
	nco (1.13214)
	ssp (1.08416)
	nms (1.06929)
	hea (1.02249)
	cje (0.826173)
	cbe (0.717703)
	fbs (0.701385)
	eje (0.691836)
	vin (0.665115)
	pgl (0.592417)
	pty (0.570858)
	mgm (0.541028)
	nmm (0.531209)
	ton (0.526501)
	sin (0.524843)
	duo (0.518403)
	nje (0.49776)
	bla (0.497389)
	jej (0.494609)
	med (0.465008)
	isp (0.451128)
	amn (0.417711)
	fcc (0.39557)
	sto (0.359648)
	ill (0.351185)
	ecc (0.345105)
	mga (0.32041)
	bfe (0.299715)
	hyp (0.285673)
	lnt (0.284616)
	csk (0.281492)
	cst (0.280073)
	ova (0.258264)
	thg (0.253582)
	ese (0.253004)
	eep (0.245128)
	eru (0.240096)
	ebs (0.236602)
	ece (0.229305)
	spc (0.226732)
	mas (0.210305)
	tes (0.207814)
	fty (0.17584)
	rec (0.17307)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	csp (0.161186)
	cag (0.151194)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	lyg (0.133103)
	sug (0.127291)
	cly (0.120642)
	cty (0.10408)
	nbm (0.0993246)