Non-Coding RNA Search

Ss1.1-rcbr0_003656.5

Sequence:


               
               GATCGAGATGGAGATGTTGGAGACTAATGAATCCTCGCAAGTTACTGAGAAGGAACACAC
AAGACAACCACTTATGACTCTTTTTCAGAAAGTTTAATCCAGTAGTTTGACTTCTGCCAG
GGTGATCTTCCGTTGGCCCTGATTCCATTAAATGGCCTTAACATTTTTTTAAAGGAATTT
GTGTTGAAACCAGAATGAACAGTATCTGTGCTGCTTTTCGTAGAATAAATGATGATTTGA
CACAGATATAGACACAAGCAAGCTCTGAAGTTAATTAAATAGAAAAGAATATTGGATGTT
TACAGTGAGTAATTTTAAAACCACAGACAAGCAGAGATGTACTGTATTCCTGTGTAACTT
ATAAAGCCACGTTAAAGGCAACAGAGTTCTGGTTTAGCCTTTCTGGACTAAATGTGTTAT
ACTGCAAAGCAAACTGTAAAATGGAAGAAGCCCAACCAAGCTTTTAGTAATTGCAGCTAT
GCCCTCTGCTCTGCCAGCTGAGGGTAGATTTACCAATTACTTGCTCCTAATCTGACCTCA
GTACGTTCTGCTGAGTATGAGATAAACTCCCTTTTACCTGCTTGTACGAATTTCCCTATG
CCGATCCTTAATTTCAACTCTGCAGGTTCTTGGCAGGCTACTCTTTAAATGTTGAATGGC
CTTTAGTAAAAGCAGTGGGTTATTTTTGATCATTGATTTGTTGAAAGAACGTTGATCTTT
TTCAGAAGACTTAATAGTCAAAAACGAGGTAACCTGGAATTCCTGCTGTGGCGCAGCAGG
TTAAGGCTCTGGTACTGTCTCTGTGGCGCAGGTTTAATCCTCAGCCTCATGCAGTGGGTT
AAGGATCCAGCTGTGGCTTAGGAGAGCGCTCTGGCTCGGATTCCATCCCTGGCCTGAGAA
CTTCTGTATGCCTTGGTTGCGGCCAAAAACAAAACAGAACAACAACCATAAAAAAAGGAT
GACCTGAGCTGCATTTGTAGAAACAGGATGGTGTGAGAAATTGTGTGTATGTGTCAAGGC
AGGGAGTATATGTGAGAGAAAAGCATCTGACAGAGAGCTGAACCTTGGATTGTTAATAGC
AGAGATCATAGTGGAATATTAGCATTCTGCAGTTATTCTTTAAACACATTTTATTGATAT
ACTTTTGTCATTTGGTACAACAATTTTGCTACTGCCCAGAATTTAGTATTTGTTACCTAC
ATTATGATTCATACTTTCTTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCGAGATGGAGATGTTGGAGACTAATGAATCCTCGCAAGTTACTGAGAAGGAACACAC
AAGACAACCACTTATGACTCTTTTTCAGAAAGTTTAATCCAGTAGTTTGACTTCTGCCAG
GGTGATCTTCCGTTGGCCCTGATTCCATTAAATGGCCTTAACATTTTTTTAAAGGAATTT
GTGTTGAAACCAGAATGAACAGTATCTGTGCTGCTTTTCGTAGAATAAATGATGATTTGA
CACAGATATAGACACAAGCAAGCTCTGAAGTTAATTAAATAGAAAAGAATATTGGATGTT
TACAGTGAGTAATTTTAAAACCACAGACAAGCAGAGATGTACTGTATTCCTGTGTAACTT
ATAAAGCCACGTTAAAGGCAACAGAGTTCTGGTTTAGCCTTTCTGGACTAAATGTGTTAT
ACTGCAAAGCAAACTGTAAAATGGAAGAAGCCCAACCAAGCTTTTAGTAATTGCAGCTAT
GCCCTCTGCTCTGCCAGCTGAGGGTAGATTTACCAATTACTTGCTCCTAATCTGACCTCA
GTACGTTCTGCTGAGTATGAGATAAACTCCCTTTTACCTGCTTGTACGAATTTCCCTATG
CCGATCCTTAATTTCAACTCTGCAGGTTCTTGGCAGGCTACTCTTTAAATGTTGAATGGC
CTTTAGTAAAAGCAGTGGGTTATTTTTGATCATTGATTTGTTGAAAGAACGTTGATCTTT
TTCAGAAGACTTAATAGTCAAAAACGAGGTAACCTGGAATTCCTGCTGTGGCGCAGCAGG
TTAAGGCTCTGGTACTGTCTCTGTGGCGCAGGTTTAATCCTCAGCCTCATGCAGTGGGTT
AAGGATCCAGCTGTGGCTTAGGAGAGCGCTCTGGCTCGGATTCCATCCCTGGCCTGAGAA
CTTCTGTATGCCTTGGTTGCGGCCAAAAACAAAACAGAACAACAACCATAAAAAAAGGAT
GACCTGAGCTGCATTTGTAGAAACAGGATGGTGTGAGAAATTGTGTGTATGTGTCAAGGC
AGGGAGTATATGTGAGAGAAAAGCATCTGACAGAGAGCTGAACCTTGGATTGTTAATAGC
AGAGATCATAGTGGAATATTAGCATTCTGCAGTTATTCTTTAAACACATTTTATTGATAT
ACTTTTGTCATTTGGTACAACAATTTTGCTACTGCCCAGAATTTAGTATTTGTTACCTAC
ATTATGATTCATACTTTCTTCTTG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-756, gnl|bosTau2|chr2 (19221402-19222165)
               

               
               1-756, gnl|Hg17|chr12 (103701423-103700645)
               

               
               1-756, gnl|Mm7|chr10 (82775100-82774289)
               


               
               952-1221, gnl|bosTau2|chr2 (19222150-19222423)
               

               
               952-1221, gnl|Hg17|chr12 (103700662-103700210)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr2 (19221402-19222165)
               

               
               1-756, gnl|Hg17|chr12 (103701423-103700645)
               

               
               1-756, gnl|Mm7|chr10 (82775100-82774289)
               


               
               952-1221, gnl|bosTau2|chr2 (19222150-19222423)
               

               
               952-1221, gnl|Hg17|chr12 (103700662-103700210)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cbr (1.0238)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               pla (0.133672)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.0238)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               pla (0.133672)

	1-756, gnl\|bosTau2\|chr2 (19221402-19222165)
	1-756, gnl\|Hg17\|chr12 (103701423-103700645)
	1-756, gnl\|Mm7\|chr10 (82775100-82774289)

	952-1221, gnl\|bosTau2\|chr2 (19222150-19222423)
	952-1221, gnl\|Hg17\|chr12 (103700662-103700210)

	cbr (1.0238)
	cbe (0.239234)
	cmu (0.186393)
	sto (0.179824)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	cje (0.165235)
	pla (0.133672)