Non-Coding RNA Search

Ss1.1-rcbr0_003767.5

Sequence:


               
               CAGCCTGATTTCCCCTTGGAGGGAAGGTGAGGGAGTTGGGAGGGGAACGGAGGGAGAGTG
AAGGGACAGTCTGTTTTAGTTGGAGCGCTGCTGGCAGCCTTCCTCGCTGACGTGAATTAA
CTTTTTCTCTTTGTTTCATCTTTGAAGTCTGTGTGCTTGCCCAAGCATGCATGTGTTCAT
AAACAAACCCATCACTTTCATCATTGTTCCAGGAGCACTAAGAGCAGAGGGAAAGACGGT
GTGCAATGGTCTGTATATTTTAATAGTTCAGAGTTACAGGCGTCCATGCTTCCTTTCCAA
GGAGGTTTTACTAACAGACCGGAATCCTGGATTTTCCTGTCTTTGCTGTATTGCAAAAGC
CACATTTTGACTCCAGTTTTGTCTTACATGTAGCAGCGTCTGCAATCTGTGTCTGCTGTA
TTATAAACGGATATGCAGCCTACAAATAACTGTATTTATAAACCACTCTTCAACAGCTGG
CTCCAGTGCTGTTTTTAGAACTCTATGAAGTCATGTTGGAGTCTTTAGTTTCTAAGAGAT
TTAAGTTTTAAAAAAAAAAAGTGTTTCTTTGAAGTTTAGCTTGTATCACTCCGGGTAGGT
GGCGACATAACCAGGTTTGAAGATGAGAGAAAGAGGCTACCTGCCCTGAAAGCGTAATAC
ACATGAGCAAATCATTAAAGGACCCTGACATTCAATGCTGAGGCTTTAATAAAAAACACA
TATTTTATCCGGAGTTTATAATAGTGGTCTGAATAAGGCCCCTGTAAATAAATCAGCCTT
TAGGACCAGAAGGAGAATTATCTGGTCTTGGACTTCTATTTTTATATAGAAAGCTTGTAA
AGACTTAGGCCAACTAAGTCTACCCACAAAGAAGGAAGAAATTTGCCTTATCCCTGTGGA
CAGCCATGCAGAAACATTGTTGGCTCAGAGAAAGTCTGCCAATAAAAAGATATTAGCTAA
CAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTGATTTCCCCTTGGAGGGAAGGTGAGGGAGTTGGGAGGGGAACGGAGGGAGAGTG
AAGGGACAGTCTGTTTTAGTTGGAGCGCTGCTGGCAGCCTTCCTCGCTGACGTGAATTAA
CTTTTTCTCTTTGTTTCATCTTTGAAGTCTGTGTGCTTGCCCAAGCATGCATGTGTTCAT
AAACAAACCCATCACTTTCATCATTGTTCCAGGAGCACTAAGAGCAGAGGGAAAGACGGT
GTGCAATGGTCTGTATATTTTAATAGTTCAGAGTTACAGGCGTCCATGCTTCCTTTCCAA
GGAGGTTTTACTAACAGACCGGAATCCTGGATTTTCCTGTCTTTGCTGTATTGCAAAAGC
CACATTTTGACTCCAGTTTTGTCTTACATGTAGCAGCGTCTGCAATCTGTGTCTGCTGTA
TTATAAACGGATATGCAGCCTACAAATAACTGTATTTATAAACCACTCTTCAACAGCTGG
CTCCAGTGCTGTTTTTAGAACTCTATGAAGTCATGTTGGAGTCTTTAGTTTCTAAGAGAT
TTAAGTTTTAAAAAAAAAAAGTGTTTCTTTGAAGTTTAGCTTGTATCACTCCGGGTAGGT
GGCGACATAACCAGGTTTGAAGATGAGAGAAAGAGGCTACCTGCCCTGAAAGCGTAATAC
ACATGAGCAAATCATTAAAGGACCCTGACATTCAATGCTGAGGCTTTAATAAAAAACACA
TATTTTATCCGGAGTTTATAATAGTGGTCTGAATAAGGCCCCTGTAAATAAATCAGCCTT
TAGGACCAGAAGGAGAATTATCTGGTCTTGGACTTCTATTTTTATATAGAAAGCTTGTAA
AGACTTAGGCCAACTAAGTCTACCCACAAAGAAGGAAGAAATTTGCCTTATCCCTGTGGA
CAGCCATGCAGAAACATTGTTGGCTCAGAGAAAGTCTGCCAATAAAAAGATATTAGCTAA
CAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               39-140, - strand, RNAz p=0.598565
               

               
               704-895, - strand, RNAz p=0.973801

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-140, - strand, RNAz p=0.598565
               

               
               704-895, - strand, RNAz p=0.973801

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-961, gnl|bosTau2|chr20 (32501115-32502073)
               

               
               3-961, gnl|Hg17|chr5 (16719372-16718410)
               

               
               3-961, gnl|Mm7|chr15 (25915542-25916556)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-961, gnl|bosTau2|chr20 (32501115-32502073)
               

               
               3-961, gnl|Hg17|chr5 (16719372-16718410)
               

               
               3-961, gnl|Mm7|chr15 (25915542-25916556)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cbr (2.94343)
               

               
               fce (0.543183)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.94343)
               

               
               fce (0.543183)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

	39-140, - strand, RNAz p=0.598565
	704-895, - strand, RNAz p=0.973801

	3-961, gnl\|bosTau2\|chr20 (32501115-32502073)
	3-961, gnl\|Hg17\|chr5 (16719372-16718410)
	3-961, gnl\|Mm7\|chr15 (25915542-25916556)

	cbr (2.94343)
	fce (0.543183)
	spc (0.226732)
	mas (0.210305)
	hea (0.204499)
	col (0.195008)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	ski (0.146735)
	ssp (0.13552)
	pla (0.133672)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	clu (0.119646)
	jej (0.0989218)