Non-Coding RNA Search

Ss1.1-rcbr0_003783.5

Sequence:


               
               ATCAAGGAGAAGAAGCTGCTGGTGAGCTCGGAGGACTATGGCCGCGATCTCACAGGCGTT
CAGAACCTGAGGAAGAAGCACAAACGGCTGGAGGCAGAACTGGCTGCCCACGAGCCGGCG
ATTCAGGGTGTCCTGGACACGGGGAAGAAGCTGTCCGATGACAACACCATCGGGCAGGAG
GAGATCCAGCAGCGCCTGGCGCAGTTCGTGGAGCACTGGAAGGAGCTGAAGCAGCTGGCG
GCAGCCCGGGGCCAGCGGCTGGAAGAGTCCTTGGAGTACCAGCAGTTTGTGGCCAACGTG
GAGGAGGAGGAAGCCTGGATCAATGAGAAGATGACCCTGGTGGCCAGCGAAGACTACGGA
GACACTCTTGCTGCCATCCAGGGCCTGCTGAAGAAGCACGAAGCCTTTGAGACGGACTTC
ACCGTCCACAAGGACCGGGTAAAGGACGTCTGCGCCAACGGGCAGGACCTCGTCAAGAAG
AACAATCACCACGAGGAGAACATCTCCTCAAAGATGAAAGGCTTGAACGGGAAGGTCTCA
GACTTGGAGAAAGCCGCTGCCCAGAGGAAGGCAAAGCTGGACGAGAACTCGGCCTTCCTT
CAGTTCAACTGGAAGGCCGACGTGGTGGAGTCCTGGATCGGTGAAAAGGAGAACAGCTTA
AAGACAGATGACTATGGCCGAGACCTGTCCTCTGTCCAAACTCTCCTCACCAAACAGGAG
ACCTTCGACGCCGGCCTGCAGGCCTTCCAGCAGGAGGGCATTGCCAACATCACCGCCCTC
AAAGATCAGCTGCTGGCCGCCAAGCACGTGCAGTCAAAGGCCATCGAGTCGTCAAAGGCC
ATCGAGGCCCGGCACGCCGCCCTCATGAAGAGGTGGAGCCAGCTTCTGGCCAACTCGGCC
GCCCGGAAGAAGAAGCTGCTGGAGGCGCAGAGTCATTTCCGCAAGGTGGAGGACCTCTTC
CTGACCTTCGCCAAGAAGGCCTCCGCCTTCAACAGCTGGTTTGAAAACGCGGAGGAGGAC
CTCACGGACCCGGTGCGCTGCAACTCCCTGGAGGAGATCAAGGCCTTGCGCGAGGCCCAC
GACGCCTTCCGCTCCTCGCTCAGCTCGGCCCAGGCCGACTTCAACCAGCTGGCCGAGCTG
GACCGCCAGATCAAGAGCTTCCGCGTGGCCTCCAACCCCTACACCTGGTTCACCATGGAG
GCCCTGGAGGAGACCTGGAGGAACCTGCAGAAGATCATCAAGGAGAGGGAGCTGGAGCTG
CAGAAGGAGCAGCGCCGGCAGGAGGAGAACGACAAGCTGCGCCAGGAGTTCGCCCAGCAC
GCCAACGCCTTCCACCAGTGGATCCAGGAGACGAGGTCCTGCATGGTGGAAGAATCCGGG
ACCCTCGAATCCCAGCTTGAAGCTACCAAACGCAAGCACCAGGAGATTCGAGCCATGAGA
AGTCAGCTCAAGAAGATCGAGGACCTGGGGGCGGCCATGGAGGAAGCCCTGATCCTGGAC
AACAAGTACACGGAGCACAGCACCGTGGGCCTGGCGCAGCAGTGGGACCAGCTGGACCAG
CTGGGCATGCGCATGCAGCACAACCTGGAGCAGCAGATCCAGGCCAGGAACACGACAGGG
GTGACCGAAGAGGCCCTCAAAGAATTCAGCATGATGTTTAAACACTTCGACAAAGACAAG
TCTGGCCGGCTGAACCACCAGGAGTTCAAATCCTGCCTGCGCTCCCTGGGCTATGATCTG
CCCATGGTGGAGGAAGGGGAGCCTGACCCTGAGTTTGAGGCCATCCTGGACACCGTGGAT
CCAAACAGGGACGGCCACGTCTCCCTGCAAGAGTACATGGCCTTCATGATCAGCCGCGAG
ACCGAGAACGTCAAGTCCAGCGAGGAGATCGAGAGCGCCTTCCGGGCCCTGAGCTCCGAG
GGGAAGCCTTACGTGACCAAGGAGGAGCTGTACCAGAACCTGACTCGGGAACAAGCCGAC
TACTGCGTCTCCCACATGAAGCCCTACGTGGACGGCAAGGGCCGCGAACTCCCCACTGCT
TTCGACTATGTTGAGTTTACCCGCTCGCTCTTCGTGAATTGACCCTCTGCTCCTAGGTTA
GCCTGGCCCACGCTGCTTGCCCTGCTGTCACCCGCTGCATGTCAACTCATCTCTGTGCTC
TTAGGAGAAATACTCCAGACAGTGTTGCTTTCCAGTGTAACCTTAACCTGCTTAGCTTGG
GATAAGATGTAGTAGAAAACGGTGCTTCGAGACACCGCTTCTGGTCCAGTAGCCATCGCC
ACGTTGCTGCGGGGACCCACTTCCTGTCTTCAGGCCAGCTGCCCCATTCCGACAGCAGAA
AACTCAAAGCAGCTGGCTAGTCCCCCTCTTGTTCTCCCCATCCCACCCATTTTCTGTTTT
CATGTAAAAGACAAATAAATGACTTGACTCCCCCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAGGAGAAGAAGCTGCTGGTGAGCTCGGAGGACTATGGCCGCGATCTCACAGGCGTT
CAGAACCTGAGGAAGAAGCACAAACGGCTGGAGGCAGAACTGGCTGCCCACGAGCCGGCG
ATTCAGGGTGTCCTGGACACGGGGAAGAAGCTGTCCGATGACAACACCATCGGGCAGGAG
GAGATCCAGCAGCGCCTGGCGCAGTTCGTGGAGCACTGGAAGGAGCTGAAGCAGCTGGCG
GCAGCCCGGGGCCAGCGGCTGGAAGAGTCCTTGGAGTACCAGCAGTTTGTGGCCAACGTG
GAGGAGGAGGAAGCCTGGATCAATGAGAAGATGACCCTGGTGGCCAGCGAAGACTACGGA
GACACTCTTGCTGCCATCCAGGGCCTGCTGAAGAAGCACGAAGCCTTTGAGACGGACTTC
ACCGTCCACAAGGACCGGGTAAAGGACGTCTGCGCCAACGGGCAGGACCTCGTCAAGAAG
AACAATCACCACGAGGAGAACATCTCCTCAAAGATGAAAGGCTTGAACGGGAAGGTCTCA
GACTTGGAGAAAGCCGCTGCCCAGAGGAAGGCAAAGCTGGACGAGAACTCGGCCTTCCTT
CAGTTCAACTGGAAGGCCGACGTGGTGGAGTCCTGGATCGGTGAAAAGGAGAACAGCTTA
AAGACAGATGACTATGGCCGAGACCTGTCCTCTGTCCAAACTCTCCTCACCAAACAGGAG
ACCTTCGACGCCGGCCTGCAGGCCTTCCAGCAGGAGGGCATTGCCAACATCACCGCCCTC
AAAGATCAGCTGCTGGCCGCCAAGCACGTGCAGTCAAAGGCCATCGAGTCGTCAAAGGCC
ATCGAGGCCCGGCACGCCGCCCTCATGAAGAGGTGGAGCCAGCTTCTGGCCAACTCGGCC
GCCCGGAAGAAGAAGCTGCTGGAGGCGCAGAGTCATTTCCGCAAGGTGGAGGACCTCTTC
CTGACCTTCGCCAAGAAGGCCTCCGCCTTCAACAGCTGGTTTGAAAACGCGGAGGAGGAC
CTCACGGACCCGGTGCGCTGCAACTCCCTGGAGGAGATCAAGGCCTTGCGCGAGGCCCAC
GACGCCTTCCGCTCCTCGCTCAGCTCGGCCCAGGCCGACTTCAACCAGCTGGCCGAGCTG
GACCGCCAGATCAAGAGCTTCCGCGTGGCCTCCAACCCCTACACCTGGTTCACCATGGAG
GCCCTGGAGGAGACCTGGAGGAACCTGCAGAAGATCATCAAGGAGAGGGAGCTGGAGCTG
CAGAAGGAGCAGCGCCGGCAGGAGGAGAACGACAAGCTGCGCCAGGAGTTCGCCCAGCAC
GCCAACGCCTTCCACCAGTGGATCCAGGAGACGAGGTCCTGCATGGTGGAAGAATCCGGG
ACCCTCGAATCCCAGCTTGAAGCTACCAAACGCAAGCACCAGGAGATTCGAGCCATGAGA
AGTCAGCTCAAGAAGATCGAGGACCTGGGGGCGGCCATGGAGGAAGCCCTGATCCTGGAC
AACAAGTACACGGAGCACAGCACCGTGGGCCTGGCGCAGCAGTGGGACCAGCTGGACCAG
CTGGGCATGCGCATGCAGCACAACCTGGAGCAGCAGATCCAGGCCAGGAACACGACAGGG
GTGACCGAAGAGGCCCTCAAAGAATTCAGCATGATGTTTAAACACTTCGACAAAGACAAG
TCTGGCCGGCTGAACCACCAGGAGTTCAAATCCTGCCTGCGCTCCCTGGGCTATGATCTG
CCCATGGTGGAGGAAGGGGAGCCTGACCCTGAGTTTGAGGCCATCCTGGACACCGTGGAT
CCAAACAGGGACGGCCACGTCTCCCTGCAAGAGTACATGGCCTTCATGATCAGCCGCGAG
ACCGAGAACGTCAAGTCCAGCGAGGAGATCGAGAGCGCCTTCCGGGCCCTGAGCTCCGAG
GGGAAGCCTTACGTGACCAAGGAGGAGCTGTACCAGAACCTGACTCGGGAACAAGCCGAC
TACTGCGTCTCCCACATGAAGCCCTACGTGGACGGCAAGGGCCGCGAACTCCCCACTGCT
TTCGACTATGTTGAGTTTACCCGCTCGCTCTTCGTGAATTGACCCTCTGCTCCTAGGTTA
GCCTGGCCCACGCTGCTTGCCCTGCTGTCACCCGCTGCATGTCAACTCATCTCTGTGCTC
TTAGGAGAAATACTCCAGACAGTGTTGCTTTCCAGTGTAACCTTAACCTGCTTAGCTTGG
GATAAGATGTAGTAGAAAACGGTGCTTCGAGACACCGCTTCTGGTCCAGTAGCCATCGCC
ACGTTGCTGCGGGGACCCACTTCCTGTCTTCAGGCCAGCTGCCCCATTCCGACAGCAGAA
AACTCAAAGCAGCTGGCTAGTCCCCCTCTTGTTCTCCCCATCCCACCCATTTTCTGTTTT
CATGTAAAAGACAAATAAATGACTTGACTCCCCCAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2276-2393, - strand, RNAz p=0.999127

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2276-2393, - strand, RNAz p=0.999127

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1912-2440, gnl|bosTau2|chr19 (33092891-33093412)
               

               
               1912-2440, gnl|Hg17|chr9 (128474744-128475495)
               

               
               1912-2440, gnl|Mm7|chr2 (30038089-30038762)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1912-2440, gnl|bosTau2|chr19 (33092891-33093412)
               

               
               1912-2440, gnl|Hg17|chr9 (128474744-128475495)
               

               
               1912-2440, gnl|Mm7|chr2 (30038089-30038762)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

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               cbr (3.45534)
               

               
               fce (1.35796)
               

               
               clu (1.3161)
               

               
               fcc (0.791139)
               

               
               ebs (0.709807)
               

               
               ecc (0.690211)
               

               
               fhi (0.678311)
               

               
               nlu (0.575043)
               

               
               eye (0.511509)
               

               
               eru (0.480192)
               

               
               mas (0.42061)
               

               
               ute (0.398353)
               

               
               sme (0.305437)
               

               
               pty (0.285429)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (3.45534)
               

               
               fce (1.35796)
               

               
               clu (1.3161)
               

               
               fcc (0.791139)
               

               
               ebs (0.709807)
               

               
               ecc (0.690211)
               

               
               fhi (0.678311)
               

               
               nlu (0.575043)
               

               
               eye (0.511509)
               

               
               eru (0.480192)
               

               
               mas (0.42061)
               

               
               ute (0.398353)
               

               
               sme (0.305437)
               

               
               pty (0.285429)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1912-2440, gnl\|bosTau2\|chr19 (33092891-33093412)
	1912-2440, gnl\|Hg17\|chr9 (128474744-128475495)
	1912-2440, gnl\|Mm7\|chr2 (30038089-30038762)

	cbr (3.45534)
	fce (1.35796)
	clu (1.3161)
	fcc (0.791139)
	ebs (0.709807)
	ecc (0.690211)
	fhi (0.678311)
	nlu (0.575043)
	eye (0.511509)
	eru (0.480192)
	mas (0.42061)
	ute (0.398353)
	sme (0.305437)
	pty (0.285429)
	col (0.195008)
	fbs (0.175346)
	mcp (0.170648)
	nje (0.16592)
	cag (0.151194)
	hyp (0.142837)
	cov (0.132153)
	ova (0.129132)
	ese (0.126502)
	cly (0.120642)
	med (0.116252)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)