Non-Coding RNA Search

Ss1.1-rcbr0_003854.5

Sequence:


               
               GATCAGGCAGGAGGGCAGGGATGGGATAGTCATGGGAGGGCAGGCAACTTCAGGGCAGGG
CCTCTGGGCAGGAGGGAGAAAGTGATGGAGAGGCTTTGGACTGAGGTGACCAGGGGACAG
AGAGGCCCTTAGCAGAAGAGCAAGTGTTCTTGGCAGAAGCCACTAGCAAAGCAGGAAGAG
GGCTCACTTCGGTGTCACAAATCTTGGGTTCCAATCCCAACTCTGACACTGATTTGCTGG
GTGACCTTAGGCAAATCACTTCCCCTCTCTAGGCCCTGTAATGTGTAAAATGGAGCGACT
TGTAAGGTCTATCCTTGATGTTTTGGAGTCTTGGGGAGGCTTCTATCTCATCCTCCCCGT
CACAAACCAGGAAGGACAGTTGGAAATAAGTGAAGAGTCTGAGGGTCCCTGAGTGTCTTC
ATTGTCACCTTGTACTCATTCTCACTTCAGGAGACTATGCAGGGTTTGCAAAAGAGCTGA
GTAAGTGGACAAGGGCTCCTATTCCAGTATCTCAGGCTTAGGTGAAGGATCCCTATGGCA
GGGCAGGATGGTGGCCTTCTCACTTGTCCCTGGCTTGTGGTGGTCTGAGCTGGGGAGGGA
AGGCACCCAATGAATCAGCTTGGGACCTCTTTAGGCCTTCCCCTTTTCCTCCTCCCCAAT
GTTCCTTGGTGATGCTCTGAATAGTTACCATGAGTTCCCACCCAGGTGGTATCACCCGTC
TGAAAGAACCCTGAGAATTTCTTGCATGTCTGCCTCTTCCAGAAACCAGCCCAGGAAGGA
AGAGGGAGGCTGGTCTCAAAAAAACCTGTAGGTGTGGGGTGTGATACTCGCTGTAGCCAC
TACGGGGCGCGCGCAGGTCGCGGATTTCCCTGGTAGCTAGTCCGCGAGTCCCTCCATCCC
CGACACTGCCGGTTAGTTAATCAATGGATCCCTAGTTACTGCGCGCAGGTCCCCCGCCTT
GCCGACTCCAGCCGGGCGAGATCGGGAGCAGGCTTCTGGCCTTGCAGACCTCTGGAGCGC
GCCGAGCCCCTCTTTGTACTCATCCTCGCTAAACAGCTTGGGACCCAGACATTGAAGTAT
TTTTTTTCTCTCCGATCTCGGACACCTCCTCTGTCTCTATTTACTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCAGGCAGGAGGGCAGGGATGGGATAGTCATGGGAGGGCAGGCAACTTCAGGGCAGGG
CCTCTGGGCAGGAGGGAGAAAGTGATGGAGAGGCTTTGGACTGAGGTGACCAGGGGACAG
AGAGGCCCTTAGCAGAAGAGCAAGTGTTCTTGGCAGAAGCCACTAGCAAAGCAGGAAGAG
GGCTCACTTCGGTGTCACAAATCTTGGGTTCCAATCCCAACTCTGACACTGATTTGCTGG
GTGACCTTAGGCAAATCACTTCCCCTCTCTAGGCCCTGTAATGTGTAAAATGGAGCGACT
TGTAAGGTCTATCCTTGATGTTTTGGAGTCTTGGGGAGGCTTCTATCTCATCCTCCCCGT
CACAAACCAGGAAGGACAGTTGGAAATAAGTGAAGAGTCTGAGGGTCCCTGAGTGTCTTC
ATTGTCACCTTGTACTCATTCTCACTTCAGGAGACTATGCAGGGTTTGCAAAAGAGCTGA
GTAAGTGGACAAGGGCTCCTATTCCAGTATCTCAGGCTTAGGTGAAGGATCCCTATGGCA
GGGCAGGATGGTGGCCTTCTCACTTGTCCCTGGCTTGTGGTGGTCTGAGCTGGGGAGGGA
AGGCACCCAATGAATCAGCTTGGGACCTCTTTAGGCCTTCCCCTTTTCCTCCTCCCCAAT
GTTCCTTGGTGATGCTCTGAATAGTTACCATGAGTTCCCACCCAGGTGGTATCACCCGTC
TGAAAGAACCCTGAGAATTTCTTGCATGTCTGCCTCTTCCAGAAACCAGCCCAGGAAGGA
AGAGGGAGGCTGGTCTCAAAAAAACCTGTAGGTGTGGGGTGTGATACTCGCTGTAGCCAC
TACGGGGCGCGCGCAGGTCGCGGATTTCCCTGGTAGCTAGTCCGCGAGTCCCTCCATCCC
CGACACTGCCGGTTAGTTAATCAATGGATCCCTAGTTACTGCGCGCAGGTCCCCCGCCTT
GCCGACTCCAGCCGGGCGAGATCGGGAGCAGGCTTCTGGCCTTGCAGACCTCTGGAGCGC
GCCGAGCCCCTCTTTGTACTCATCCTCGCTAAACAGCTTGGGACCCAGACATTGAAGTAT
TTTTTTTCTCTCCGATCTCGGACACCTCCTCTGTCTCTATTTACTAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-138, + strand, RNAz p=0.995859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-138, + strand, RNAz p=0.995859

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-138, gnl|bosTau2|chr5 (22458726-22458852)
               

               
               1-138, gnl|Hg17|chr12 (47676496-47676356)
               

               
               1-138, gnl|Mm7|chr15 (98790286-98790143)
               


               
               149-423, gnl|bosTau2|chr5 (22458842-22459105)
               

               
               149-423, gnl|Hg17|chr12 (47676366-47676035)
               

               
               149-423, gnl|Mm7|chr15 (98790172-98789906)
               


               
               441-1128, gnl|bosTau2|chr5 (22459099-22459776)
               

               
               441-1128, gnl|Hg17|chr12 (47676064-47675381)
               

               
               441-1128, gnl|Mm7|chr15 (98789912-98789221)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-138, gnl|bosTau2|chr5 (22458726-22458852)
               

               
               1-138, gnl|Hg17|chr12 (47676496-47676356)
               

               
               1-138, gnl|Mm7|chr15 (98790286-98790143)
               


               
               149-423, gnl|bosTau2|chr5 (22458842-22459105)
               

               
               149-423, gnl|Hg17|chr12 (47676366-47676035)
               

               
               149-423, gnl|Mm7|chr15 (98790172-98789906)
               


               
               441-1128, gnl|bosTau2|chr5 (22459099-22459776)
               

               
               441-1128, gnl|Hg17|chr12 (47676064-47675381)
               

               
               441-1128, gnl|Mm7|chr15 (98789912-98789221)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (1.66368)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.66368)

	1-138, gnl\|bosTau2\|chr5 (22458726-22458852)
	1-138, gnl\|Hg17\|chr12 (47676496-47676356)
	1-138, gnl\|Mm7\|chr15 (98790286-98790143)

	149-423, gnl\|bosTau2\|chr5 (22458842-22459105)
	149-423, gnl\|Hg17\|chr12 (47676366-47676035)
	149-423, gnl\|Mm7\|chr15 (98790172-98789906)

	441-1128, gnl\|bosTau2\|chr5 (22459099-22459776)
	441-1128, gnl\|Hg17\|chr12 (47676064-47675381)
	441-1128, gnl\|Mm7\|chr15 (98789912-98789221)