Non-Coding RNA Search

Ss1.1-rcbr0_004153.5

Sequence:


               
               CAGACTAGGGGAATCCCCAGCGAGAGGACCCAGACCCAGGACCTGGGCTCAGTTTTTCCC
TCTCCAGGCCTCTATTTTTCCGTCTACTAACTGGGGCCATCAGCCCACCCTCCAGAGCTG
ACATGGGGGGGTTAAATATGATATGGGGGTGAAGGGCATCTGTAGGAATAGGGGTCCTTT
TCTCTTTCTGCCAGGTCCCCATAGAGTTCCAGCTTGGGGGAGGGGGAGTCCACAGAATCT
TAGCAGCAGCTCCAGCTGGAAACCCTGGCCAGTTATATACTTGGTTCTAGCATTTCCTAG
CTAAAATTACACCTTGACTCCAAAAGAACTTCAAGCCGTGTGGAGGCTCGTTCATTTGAC
AGATGTTTACTAGGTGTCTGCTGCAAGGTACCTGTTGCGATTTCCATGTCTCTTCTTGCC
AGTTTCTCCTGGGCATCCCTGGGCCAGTTGCCTTCTACTCTGAGCCCGTCTGTAGAGTGG
CCCCTCAACCCTGTTCCATATGCAAGGGACTGATGTGATTCTGGATGTGAACCAGCTTTA
GGAGCACAATGCAGTCTGGAGGGGAAGCCTTGATGGATGTTCCTTGTGCTTAAAACAGTT
TTGCATCTTTAGATCTTTTGTGTTTGTGGACCGGAGATCCCCCCACAAGTTACCTGGCAC
AAAGAAGGCCTTCAGTAGACATGTCTAGGCCAGACTTGAGAGCATGGAGGGTATGGAAGG
CTTGTTCTGATATCTGGCTTCAGGTTGCCCTTAAACCAAAGAAATGCAGCTGGCTGGGCA
GGGATTCCAAGATCTGGCTCTGTCCAGGGACCGTGAGCACTTGTTACTGGACTCAGGATG
CTCCATGAGACCTCCCTCAGGCTGGCACCCTTCACCGCTACTCACTCAGTCACTCAACAA
ACATGCCTACAATGTGCCAAACCCTGTGCTGCTACTGGGCAAGCTGGGAACTTGATTCAG
GGTGAGCGAGGGGGATGGGAGCTGAGGGCCCCTCCTGGACACCTTCATCTCAGCCTAGGT
CACCAGGGCCTGTTGAGAGGGTGGGTGGGTTGGGCATGGCCAGTCTCAAGTGGAGTTTTG
GCCCAGACCAAGCCGGGTTGGGGCAGCCCTCTGCATGTGGGTGCTCAGGGCATCACCCTG
CAGCTTTATTGAGATCAGCATGGGAGTGTTGGGGTCCCGGGTGTTGCCCAGTTATTGGGA
AAGTGCCTTGATCTGGTGAAGCCTGGGAACTGGGTGGGTCCTGAAGCTGTAGGGCCCCAA
AACTCCTCCTATTGCATGTCCATCAAGGCTCAGCATCAAGGGTCAGCAAATAAATTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGACTAGGGGAATCCCCAGCGAGAGGACCCAGACCCAGGACCTGGGCTCAGTTTTTCCC
TCTCCAGGCCTCTATTTTTCCGTCTACTAACTGGGGCCATCAGCCCACCCTCCAGAGCTG
ACATGGGGGGGTTAAATATGATATGGGGGTGAAGGGCATCTGTAGGAATAGGGGTCCTTT
TCTCTTTCTGCCAGGTCCCCATAGAGTTCCAGCTTGGGGGAGGGGGAGTCCACAGAATCT
TAGCAGCAGCTCCAGCTGGAAACCCTGGCCAGTTATATACTTGGTTCTAGCATTTCCTAG
CTAAAATTACACCTTGACTCCAAAAGAACTTCAAGCCGTGTGGAGGCTCGTTCATTTGAC
AGATGTTTACTAGGTGTCTGCTGCAAGGTACCTGTTGCGATTTCCATGTCTCTTCTTGCC
AGTTTCTCCTGGGCATCCCTGGGCCAGTTGCCTTCTACTCTGAGCCCGTCTGTAGAGTGG
CCCCTCAACCCTGTTCCATATGCAAGGGACTGATGTGATTCTGGATGTGAACCAGCTTTA
GGAGCACAATGCAGTCTGGAGGGGAAGCCTTGATGGATGTTCCTTGTGCTTAAAACAGTT
TTGCATCTTTAGATCTTTTGTGTTTGTGGACCGGAGATCCCCCCACAAGTTACCTGGCAC
AAAGAAGGCCTTCAGTAGACATGTCTAGGCCAGACTTGAGAGCATGGAGGGTATGGAAGG
CTTGTTCTGATATCTGGCTTCAGGTTGCCCTTAAACCAAAGAAATGCAGCTGGCTGGGCA
GGGATTCCAAGATCTGGCTCTGTCCAGGGACCGTGAGCACTTGTTACTGGACTCAGGATG
CTCCATGAGACCTCCCTCAGGCTGGCACCCTTCACCGCTACTCACTCAGTCACTCAACAA
ACATGCCTACAATGTGCCAAACCCTGTGCTGCTACTGGGCAAGCTGGGAACTTGATTCAG
GGTGAGCGAGGGGGATGGGAGCTGAGGGCCCCTCCTGGACACCTTCATCTCAGCCTAGGT
CACCAGGGCCTGTTGAGAGGGTGGGTGGGTTGGGCATGGCCAGTCTCAAGTGGAGTTTTG
GCCCAGACCAAGCCGGGTTGGGGCAGCCCTCTGCATGTGGGTGCTCAGGGCATCACCCTG
CAGCTTTATTGAGATCAGCATGGGAGTGTTGGGGTCCCGGGTGTTGCCCAGTTATTGGGA
AAGTGCCTTGATCTGGTGAAGCCTGGGAACTGGGTGGGTCCTGAAGCTGTAGGGCCCCAA
AACTCCTCCTATTGCATGTCCATCAAGGCTCAGCATCAAGGGTCAGCAAATAAATTTGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1095-1243, - strand, RNAz p=0.996364

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1095-1243, - strand, RNAz p=0.996364

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-1320, gnl|bosTau2|chr7 (5926139-5927469)
               

               
               17-1320, gnl|Hg17|chr19 (16660201-16661825)
               

               
               17-1320, gnl|Mm7|chr8 (71109505-71110662)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-1320, gnl|bosTau2|chr7 (5926139-5927469)
               

               
               17-1320, gnl|Hg17|chr19 (16660201-16661825)
               

               
               17-1320, gnl|Mm7|chr8 (71109505-71110662)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nms (0.427716)
               

               
               mas (0.42061)
               

               
               cbr (0.383926)
               

               
               nca (0.273748)
               

               
               ssp (0.13552)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               mas (0.42061)
               

               
               cbr (0.383926)
               

               
               nca (0.273748)
               

               
               ssp (0.13552)
               

               
               eje (0.0988338)

	17-1320, gnl\|bosTau2\|chr7 (5926139-5927469)
	17-1320, gnl\|Hg17\|chr19 (16660201-16661825)
	17-1320, gnl\|Mm7\|chr8 (71109505-71110662)

	nms (0.427716)
	mas (0.42061)
	cbr (0.383926)
	nca (0.273748)
	ssp (0.13552)
	eje (0.0988338)