Ss1.1-rcbr0_004254.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAATTCGAATTCGCGGAGCGCGGGAGAGAGGACCCGAGAGCTGAGCGTCTGGTTCAGCGC GGGTCTGCGGGCTCTCCACCGCTTTAGAGTCCGCACCTGGCACCTCATAGACCCCCCACT CCCGCCCTGCACCAGCCTCCGTTCCAGCCAAGGACCACTGACACCAGCATGGACTGCTGC ACCGAGAGCGCCTGCTCCAAGCCGGATGACGACATTCTAGACATCCCGCTGGACGATCCA GGTGCCAACGCTGCCGCCGCCAAAATCCAGGCGAGTTTCCGGGGCCACATGGCGCGGAAG AAGATAAAGAGCGGAGAGCGCGGCCGGAAGGGCCCTGGCTCCGGGGGGCCGGGCGGAGCC GGGGGCGCCCGGGGAGGCGCGGGCGGCGGCCCCAGCGGAGACTAGGCCAGTTCCCGAACA GAGATGGATGCCGCGTCCCTTTCGCAGTGACGAGACTTCCCTGCCGTGTTTGTGATTCTC TACTTCCGACCAACCTGCCAGCTTCAGGAGCCCTCTCTGCGTCCCCAGAGACTCCCTCTA CCAGGCAGACTCCGTCGAAGAGTCGCTATGTCCACGCCCTTTTAGTTAGTTCTCCAGTCT AGTATGGTACCCATTCGCCCGTCCTCCCCACCCTAACCCCAGTCCCCGCGCTCCTAAATC TTCCTTCTTTAGCTTCTCGCCCACTTCTCCCCGCACCTGCATGCAGCTCTGCCTCCGCAG CCTCCGTGCGCTTCCCGTCGCTCACTGCGGAGGGCGCCCTACGCGTTGCCCAAGGACACA CTTTAAAAAAAAGTCCTTTCGTTCTGAGCGCAGCTAAAGGGGGCGCCGTGCGTCTCCGTG CTGTTCACGCCCAAGCCTGGCCCCAGAACTTGGGATCCGGTACGAGGAGAGAGGGGAGGA GGGTTTTTATGGTGTCACATACCCCTTGCTGTGACCACAAGTCCCTATTTCATACCCCAA CCCCACACCTGCCTGTAATCTACCCTCCCCTCTCGCCAGTGCAGCCGAAGAGCCGCCTCT CCAGCTCTCTGCTTGTTTATCCAAACGCCGAGCGCGGGGGAGGCTCGACAGGAGGAGTCT TCCGCGGCCCCGCCCCTGCTCCGGCTGGCCCCGCCCCCACCGGGCTCCTGGGGCTGTGGC CGTGAGGTTTTTTATCTCCGCGTGTGCATGTGACTGTGCTGGGTTGGAATGTGAACAATA AAGAGGAATGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAATTCGAATTCGCGGAGCGCGGGAGAGAGGACCCGAGAGCTGAGCGTCTGGTTCAGCGC GGGTCTGCGGGCTCTCCACCGCTTTAGAGTCCGCACCTGGCACCTCATAGACCCCCCACT CCCGCCCTGCACCAGCCTCCGTTCCAGCCAAGGACCACTGACACCAGCATGGACTGCTGC ACCGAGAGCGCCTGCTCCAAGCCGGATGACGACATTCTAGACATCCCGCTGGACGATCCA GGTGCCAACGCTGCCGCCGCCAAAATCCAGGCGAGTTTCCGGGGCCACATGGCGCGGAAG AAGATAAAGAGCGGAGAGCGCGGCCGGAAGGGCCCTGGCTCCGGGGGGCCGGGCGGAGCC GGGGGCGCCCGGGGAGGCGCGGGCGGCGGCCCCAGCGGAGACTAGGCCAGTTCCCGAACA GAGATGGATGCCGCGTCCCTTTCGCAGTGACGAGACTTCCCTGCCGTGTTTGTGATTCTC TACTTCCGACCAACCTGCCAGCTTCAGGAGCCCTCTCTGCGTCCCCAGAGACTCCCTCTA CCAGGCAGACTCCGTCGAAGAGTCGCTATGTCCACGCCCTTTTAGTTAGTTCTCCAGTCT AGTATGGTACCCATTCGCCCGTCCTCCCCACCCTAACCCCAGTCCCCGCGCTCCTAAATC TTCCTTCTTTAGCTTCTCGCCCACTTCTCCCCGCACCTGCATGCAGCTCTGCCTCCGCAG CCTCCGTGCGCTTCCCGTCGCTCACTGCGGAGGGCGCCCTACGCGTTGCCCAAGGACACA CTTTAAAAAAAAGTCCTTTCGTTCTGAGCGCAGCTAAAGGGGGCGCCGTGCGTCTCCGTG CTGTTCACGCCCAAGCCTGGCCCCAGAACTTGGGATCCGGTACGAGGAGAGAGGGGAGGA GGGTTTTTATGGTGTCACATACCCCTTGCTGTGACCACAAGTCCCTATTTCATACCCCAA CCCCACACCTGCCTGTAATCTACCCTCCCCTCTCGCCAGTGCAGCCGAAGAGCCGCCTCT CCAGCTCTCTGCTTGTTTATCCAAACGCCGAGCGCGGGGGAGGCTCGACAGGAGGAGTCT TCCGCGGCCCCGCCCCTGCTCCGGCTGGCCCCGCCCCCACCGGGCTCCTGGGGCTGTGGC CGTGAGGTTTTTTATCTCCGCGTGTGCATGTGACTGTGCTGGGTTGGAATGTGAACAATA AAGAGGAATGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 673-790, - strand, RNAz p=0.512381 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 673-790, - strand, RNAz p=0.512381 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 13-184, gnl|bosTau2|chr29 (20890948-20890787) | |
| 13-184, gnl|canFam2|chr5 (12681997-12680577) | |
| 13-184, gnl|echTel1|scaffold_312998 (8035-6534) | |
| 13-184, gnl|hg17|chr11 (124114390-124115787) | |
| 13-184, gnl|Hg17|chr11 (124115036-124115206) | |
| 13-184, gnl|mm7|chr9 (37481958-37480600) | |
| 13-184, gnl|Mm7|chr9 (37481334-37481154) | |
| 13-184, gnl|monDom2|scaffold_15 (10479835-10481240) | |
| 13-184, gnl|oryCun1|scaffold_214644 (123681-122422) | |
| 13-184, gnl|panTro1|chr9 (126196162-126197558) | |
| 13-184, gnl|rheMac2|chr14 (122891030-122892416) | |
| 13-184, gnl|rn3|chr8 (38808396-38807046) | |
| 408-1212, gnl|bosTau2|chr29 (20884324-20883514) | |
| 408-1212, gnl|canFam2|chr5 (12675716-12674775) | |
| 408-1212, gnl|dasNov1|scaffold_93286 (3940-4871) | |
| 408-1212, gnl|echTel1|scaffold_291624 (2532-3417) | |
| 408-1212, gnl|hg17|chr11 (124121451-124122345) | |
| 408-1212, gnl|Hg17|chr11 (124121507-124122306) | |
| 408-1212, gnl|loxAfr1|scaffold_5347 (59802-58842) | |
| 408-1212, gnl|mm7|chr9 (37474004-37473054) | |
| 408-1212, gnl|Mm7|chr9 (37473952-37473118) | |
| 408-1212, gnl|monDom2|scaffold_15 (10487770-10488895) | |
| 408-1212, gnl|oryCun1|scaffold_214644 (116532-115682) | |
| 408-1212, gnl|panTro1|chr9 (126203233-126204133) | |
| 408-1212, gnl|rheMac2|chr14 (122898084-122898986) | |
| 408-1212, gnl|rn3|chr8 (38800281-38799305) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-184, gnl|bosTau2|chr29 (20890948-20890787) | |
| 13-184, gnl|canFam2|chr5 (12681997-12680577) | |
| 13-184, gnl|echTel1|scaffold_312998 (8035-6534) | |
| 13-184, gnl|hg17|chr11 (124114390-124115787) | |
| 13-184, gnl|Hg17|chr11 (124115036-124115206) | |
| 13-184, gnl|mm7|chr9 (37481958-37480600) | |
| 13-184, gnl|Mm7|chr9 (37481334-37481154) | |
| 13-184, gnl|monDom2|scaffold_15 (10479835-10481240) | |
| 13-184, gnl|oryCun1|scaffold_214644 (123681-122422) | |
| 13-184, gnl|panTro1|chr9 (126196162-126197558) | |
| 13-184, gnl|rheMac2|chr14 (122891030-122892416) | |
| 13-184, gnl|rn3|chr8 (38808396-38807046) | |
| 408-1212, gnl|bosTau2|chr29 (20884324-20883514) | |
| 408-1212, gnl|canFam2|chr5 (12675716-12674775) | |
| 408-1212, gnl|dasNov1|scaffold_93286 (3940-4871) | |
| 408-1212, gnl|echTel1|scaffold_291624 (2532-3417) | |
| 408-1212, gnl|hg17|chr11 (124121451-124122345) | |
| 408-1212, gnl|Hg17|chr11 (124121507-124122306) | |
| 408-1212, gnl|loxAfr1|scaffold_5347 (59802-58842) | |
| 408-1212, gnl|mm7|chr9 (37474004-37473054) | |
| 408-1212, gnl|Mm7|chr9 (37473952-37473118) | |
| 408-1212, gnl|monDom2|scaffold_15 (10487770-10488895) | |
| 408-1212, gnl|oryCun1|scaffold_214644 (116532-115682) | |
| 408-1212, gnl|panTro1|chr9 (126203233-126204133) | |
| 408-1212, gnl|rheMac2|chr14 (122898084-122898986) | |
| 408-1212, gnl|rn3|chr8 (38800281-38799305) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cbr (6.65472) | |
| fcc (2.5712) | |
| fhi (0.847889) | |
| ece (0.45861) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (6.65472) | |
| fcc (2.5712) | |
| fhi (0.847889) | |
| ece (0.45861) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| pgl (0.118483) | |
| ecc (0.115035) |