Non-Coding RNA Search

Ss1.1-rcbr0_005057.5

Sequence:


               
               TATTCAGTCACAAAAACTGCAGCTTAAATTGTTTACAAGAAATCCTTGATGTTAAGATCC
GCTAATGGGTCCTTTGCTGGAGGTTTCTTGGGACTCTGAGTGGCAGGTGTAGGGCTTGGA
GAAAGCTGTGCGCCAGGTACAGCTGCAGCTCCAAAGGGTGGCCGCATCATGGGCTGTGCA
AACATGACTGGCTGCTGAGGCATCATGGTCATGCCCGTCCCAGCTGGAGGCATTCCAAAT
CCTGCTCCAGGCTGTCCGACAGATGGGGCCCCCGCAACAGGAGGAACTGAACTGGTTGGA
GGTACAGCTCCTTGCAGTGGGGCACTCGGTGGGACTCCGGCTGACCAGGTAGCAGGGGCT
ACTTTCGGCTGCCAGTTGGCTCCCCCAGTCAACTTTTTCTCTCCGGCATTCCATTGAAGA
TCTCCCTTTTTGGATGTGGTACCAGAAATTCCAAGATTGCCTACTAAGCTGGCAAGAGAT
GAGTCAAGATCGCTCCCGAGGGCTTTACTTGCTGCCATTGCAGGACTGGGAGGTACCATT
GAGATGGGTGCAGGCTGCCCGGCTGGTGCCATGGTTGGCATCAGAAGATCACCTAGACCA
TCAAACACTGATGGATCAAAGGAACTGCTGCTAGAAGTTGAAGGCGTTGTTCCAAAAGCT
GCCTCAAAATTGGGCTGTAGCAGGTTATTCTGAGCTGGAGTCGCTGGTGATGGAGAAGGG
GCCATGAAAGAACCCCCAAATCCGGCTAGTAGATCGGCCGATGCTGATGAGCTAGAAGCA
GCCTGAGGTGCAGGTTGGGGTTCAGAAGCACTACTTCCAAATGCATCCCCAAAAAGATCT
ATCACACCTGAAGAATCCACCTTTGCTGGCGAGGCAGTGGTTGCAGGAGATGGTGCGACA
AATGCATCCACGGATAAGAGGTCAGCAGTGAGAGAACTCTCAGGCACAGGAGAGGCCCCT
TGTGGTGGTGAGGAGAAAGCATCTGTCCCAAACAGGTCTATGCTAGGAGCAGCATCTGGC
TTGGGCGCTGCAGCGACTTCAGGAGCAGACTCAAATAAATCACCAAAGATATCTAGAGCA
GGAGGAGCGGTGGTGGTGGTGGTGGTGGCAGAGGTGGTGGCGGTGGCGGTGGTGGCTGTG
GCGGTGGCGGCAGCGGTCGTGGCAGCTGCAACGGCGGGAGCAGGAGAAGGAGCGGTGGCG
GGAACCGGAGGGGCTGCGCTAGCTGTAGGGGTAACTACAGGCACAGTGGTCTCGGGTGGC
TTCATGGCAAAGAGGTCCAGCTCGGGCGCAGCCTCTGCACTACCTTCAGATGGGGCAAAG
GGGTCATTTCCTGAACATGCATCAAGTGCCGCTGCTACAGGGGCTGGGGGAGCTGCTGCG
GCGGCCCCTTCGGATGCTGCAGGGGCCTCCCCGGGAGAAGCTGCAAAGGCATCTCCAAAG
AGATCCACGTCGGCCGTGACAGCAGTAACAGTTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTCAGTCACAAAAACTGCAGCTTAAATTGTTTACAAGAAATCCTTGATGTTAAGATCC
GCTAATGGGTCCTTTGCTGGAGGTTTCTTGGGACTCTGAGTGGCAGGTGTAGGGCTTGGA
GAAAGCTGTGCGCCAGGTACAGCTGCAGCTCCAAAGGGTGGCCGCATCATGGGCTGTGCA
AACATGACTGGCTGCTGAGGCATCATGGTCATGCCCGTCCCAGCTGGAGGCATTCCAAAT
CCTGCTCCAGGCTGTCCGACAGATGGGGCCCCCGCAACAGGAGGAACTGAACTGGTTGGA
GGTACAGCTCCTTGCAGTGGGGCACTCGGTGGGACTCCGGCTGACCAGGTAGCAGGGGCT
ACTTTCGGCTGCCAGTTGGCTCCCCCAGTCAACTTTTTCTCTCCGGCATTCCATTGAAGA
TCTCCCTTTTTGGATGTGGTACCAGAAATTCCAAGATTGCCTACTAAGCTGGCAAGAGAT
GAGTCAAGATCGCTCCCGAGGGCTTTACTTGCTGCCATTGCAGGACTGGGAGGTACCATT
GAGATGGGTGCAGGCTGCCCGGCTGGTGCCATGGTTGGCATCAGAAGATCACCTAGACCA
TCAAACACTGATGGATCAAAGGAACTGCTGCTAGAAGTTGAAGGCGTTGTTCCAAAAGCT
GCCTCAAAATTGGGCTGTAGCAGGTTATTCTGAGCTGGAGTCGCTGGTGATGGAGAAGGG
GCCATGAAAGAACCCCCAAATCCGGCTAGTAGATCGGCCGATGCTGATGAGCTAGAAGCA
GCCTGAGGTGCAGGTTGGGGTTCAGAAGCACTACTTCCAAATGCATCCCCAAAAAGATCT
ATCACACCTGAAGAATCCACCTTTGCTGGCGAGGCAGTGGTTGCAGGAGATGGTGCGACA
AATGCATCCACGGATAAGAGGTCAGCAGTGAGAGAACTCTCAGGCACAGGAGAGGCCCCT
TGTGGTGGTGAGGAGAAAGCATCTGTCCCAAACAGGTCTATGCTAGGAGCAGCATCTGGC
TTGGGCGCTGCAGCGACTTCAGGAGCAGACTCAAATAAATCACCAAAGATATCTAGAGCA
GGAGGAGCGGTGGTGGTGGTGGTGGTGGCAGAGGTGGTGGCGGTGGCGGTGGTGGCTGTG
GCGGTGGCGGCAGCGGTCGTGGCAGCTGCAACGGCGGGAGCAGGAGAAGGAGCGGTGGCG
GGAACCGGAGGGGCTGCGCTAGCTGTAGGGGTAACTACAGGCACAGTGGTCTCGGGTGGC
TTCATGGCAAAGAGGTCCAGCTCGGGCGCAGCCTCTGCACTACCTTCAGATGGGGCAAAG
GGGTCATTTCCTGAACATGCATCAAGTGCCGCTGCTACAGGGGCTGGGGGAGCTGCTGCG
GCGGCCCCTTCGGATGCTGCAGGGGCCTCCCCGGGAGAAGCTGCAAAGGCATCTCCAAAG
AGATCCACGTCGGCCGTGACAGCAGTAACAGTTGTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7TT20_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7TT20_MOUSE

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               23-127, gnl|bosTau2|chr9 (10539627-10539731)
               

               
               23-127, gnl|canFam2|chr12 (46924947-46925035)
               

               
               23-127, gnl|danRer3|chr16 (44129082-44129162)
               

               
               23-127, gnl|dasNov1|scaffold_24932 (6521-6440)
               

               
               23-127, gnl|echTel1|scaffold_87308 (4734-4817)
               

               
               23-127, gnl|hg17|chr6 (84322571-84322659)
               

               
               23-127, gnl|Hg17|chr6 (84322581-84322685)
               

               
               23-127, gnl|loxAfr1|scaffold_22808 (10990-10902)
               

               
               23-127, gnl|monDom2|scaffold_0 (146428871-146428783)
               

               
               23-127, gnl|oryCun1|scaffold_205662 (26434-26353)
               

               
               23-127, gnl|rheMac2|chr4 (79580383-79580471)
               

               
               23-127, gnl|rn3|chr8 (92055085-92055173)
               

               
               23-127, gnl|xenTro1|scaffold_73 (2074459-2074371)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-127, gnl|bosTau2|chr9 (10539627-10539731)
               

               
               23-127, gnl|canFam2|chr12 (46924947-46925035)
               

               
               23-127, gnl|danRer3|chr16 (44129082-44129162)
               

               
               23-127, gnl|dasNov1|scaffold_24932 (6521-6440)
               

               
               23-127, gnl|echTel1|scaffold_87308 (4734-4817)
               

               
               23-127, gnl|hg17|chr6 (84322571-84322659)
               

               
               23-127, gnl|Hg17|chr6 (84322581-84322685)
               

               
               23-127, gnl|loxAfr1|scaffold_22808 (10990-10902)
               

               
               23-127, gnl|monDom2|scaffold_0 (146428871-146428783)
               

               
               23-127, gnl|oryCun1|scaffold_205662 (26434-26353)
               

               
               23-127, gnl|rheMac2|chr4 (79580383-79580471)
               

               
               23-127, gnl|rn3|chr8 (92055085-92055173)
               

               
               23-127, gnl|xenTro1|scaffold_73 (2074459-2074371)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cbr (0.639877)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.639877)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)

	23-127, gnl\|bosTau2\|chr9 (10539627-10539731)
	23-127, gnl\|canFam2\|chr12 (46924947-46925035)
	23-127, gnl\|danRer3\|chr16 (44129082-44129162)
	23-127, gnl\|dasNov1\|scaffold_24932 (6521-6440)
	23-127, gnl\|echTel1\|scaffold_87308 (4734-4817)
	23-127, gnl\|hg17\|chr6 (84322571-84322659)
	23-127, gnl\|Hg17\|chr6 (84322581-84322685)
	23-127, gnl\|loxAfr1\|scaffold_22808 (10990-10902)
	23-127, gnl\|monDom2\|scaffold_0 (146428871-146428783)
	23-127, gnl\|oryCun1\|scaffold_205662 (26434-26353)
	23-127, gnl\|rheMac2\|chr4 (79580383-79580471)
	23-127, gnl\|rn3\|chr8 (92055085-92055173)
	23-127, gnl\|xenTro1\|scaffold_73 (2074459-2074371)

	cbr (0.639877)
	cbe (0.239234)
	pgl (0.236967)
	ece (0.229305)
	fcc (0.197785)
	nco (0.161734)