Non-Coding RNA Search

Ss1.1-rcbr0_005121.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAGAGCAGTT
TCTCTTTTATTGTGGAACCGGACATGGCAAGAGGGCCAGAGGGATAGGGGACGGCCAGCC
CTAGCCTCCCTCCACTGGGGGCAGTCTCCCGAGGTTGGTGAACAAGGGATTCCATCTCTA
GCCAGGGAAACCCAGTCCGCAGAGGGCTCCAGAATGGGCGGGGCGGGGGCGGGGCGGGGT
TGACCGGGTGGTCTTTAAATAGAAGAGGGGGCTGGAGCGGGGAAACGCAGTGGTGCTCTA
GCGCACCATATATTCCTTGCGCTTATTGAGCCGAACTTGGCAGAAAGAGAAGCCTCCGAG
GAGAAGGTAAAGGCCCGCGGCGATGAAACAGTTGTAGCTGACTTGCTCGTAGAGCTTGTA
TATGTCCTGGGGGCCATTCTCAAAATCTTTCTCCGTGAAAGGAACGTCTTCAATGAGCAC
AGCAGAGTGGACATTGAAAAAGATTCCGAGCATTATCAACATGATCACTCCCCAGGCGCT
AAGGACGATGCCGCAGGCGGCCAGCTTGGGCCCACAGCACAGAAGCGACGCCATGAAGAA
GGGAGTCGGGGATCGCCTAGAGGTGGGCCAGGTAGAAAGGCGGCAGGAGGAGGCCGATGA
GCTGGGGGAAAGCGAGCAGGACTTGGGGGCTCGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAGAGCAGTT
TCTCTTTTATTGTGGAACCGGACATGGCAAGAGGGCCAGAGGGATAGGGGACGGCCAGCC
CTAGCCTCCCTCCACTGGGGGCAGTCTCCCGAGGTTGGTGAACAAGGGATTCCATCTCTA
GCCAGGGAAACCCAGTCCGCAGAGGGCTCCAGAATGGGCGGGGCGGGGGCGGGGCGGGGT
TGACCGGGTGGTCTTTAAATAGAAGAGGGGGCTGGAGCGGGGAAACGCAGTGGTGCTCTA
GCGCACCATATATTCCTTGCGCTTATTGAGCCGAACTTGGCAGAAAGAGAAGCCTCCGAG
GAGAAGGTAAAGGCCCGCGGCGATGAAACAGTTGTAGCTGACTTGCTCGTAGAGCTTGTA
TATGTCCTGGGGGCCATTCTCAAAATCTTTCTCCGTGAAAGGAACGTCTTCAATGAGCAC
AGCAGAGTGGACATTGAAAAAGATTCCGAGCATTATCAACATGATCACTCCCCAGGCGCT
AAGGACGATGCCGCAGGCGGCCAGCTTGGGCCCACAGCACAGAAGCGACGCCATGAAGAA
GGGAGTCGGGGATCGCCTAGAGGTGGGCCAGGTAGAAAGGCGGCAGGAGGAGGCCGATGA
GCTGGGGGAAAGCGAGCAGGACTTGGGGGCTCGCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34871030|ref|XP_237786.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34871030|ref|XP_237786.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               556-671, + strand, RNAz p=0.953097

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               556-671, + strand, RNAz p=0.953097

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               47-439, gnl|bosTau2|chr19 (14659070-14658683)
               

               
               47-439, gnl|Hg17|chr17 (6858575-6858188)
               

               
               47-439, gnl|Mm7|chr11 (70319699-70320044)
               


               
               517-696, gnl|bosTau2|chr19 (14657533-14657355)
               

               
               517-696, gnl|Hg17|chr17 (6856804-6856652)
               

               
               517-696, gnl|Mm7|chr11 (70321230-70321413)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-439, gnl|bosTau2|chr19 (14659070-14658683)
               

               
               47-439, gnl|Hg17|chr17 (6858575-6858188)
               

               
               47-439, gnl|Mm7|chr11 (70319699-70320044)
               


               
               517-696, gnl|bosTau2|chr19 (14657533-14657355)
               

               
               517-696, gnl|Hg17|chr17 (6856804-6856652)
               

               
               517-696, gnl|Mm7|chr11 (70321230-70321413)

Expressed library(ies): 32 entry(ies)

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Expressed library(ies): 32 entry(ies)

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               cbr (1.40773)
               

               
               amn (0.835422)
               

               
               ebs (0.828108)
               

               
               fhi (0.678311)
               

               
               fcc (0.593354)
               

               
               cag (0.453583)
               

               
               fbs (0.350693)
               

               
               csp (0.322373)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.40773)
               

               
               amn (0.835422)
               

               
               ebs (0.828108)
               

               
               fhi (0.678311)
               

               
               fcc (0.593354)
               

               
               cag (0.453583)
               

               
               fbs (0.350693)
               

               
               csp (0.322373)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	47-439, gnl\|bosTau2\|chr19 (14659070-14658683)
	47-439, gnl\|Hg17\|chr17 (6858575-6858188)
	47-439, gnl\|Mm7\|chr11 (70319699-70320044)

	517-696, gnl\|bosTau2\|chr19 (14657533-14657355)
	517-696, gnl\|Hg17\|chr17 (6856804-6856652)
	517-696, gnl\|Mm7\|chr11 (70321230-70321413)

	cbr (1.40773)
	amn (0.835422)
	ebs (0.828108)
	fhi (0.678311)
	fcc (0.593354)
	cag (0.453583)
	fbs (0.350693)
	csp (0.322373)
	cga (0.279096)
	fce (0.271592)
	pla (0.267344)
	cov (0.264306)
	cly (0.241284)
	med (0.232504)
	nlu (0.191681)
	fty (0.17584)
	ton (0.1755)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	cli (0.152812)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	ste (0.135208)
	nmm (0.132802)
	ese (0.126502)
	eep (0.122564)
	pgl (0.118483)
	nbm (0.0993246)
	jej (0.0989218)