Ss1.1-rcbr0_005231.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGCCCCCCGCCGCCGCCACACGCTCCAGCGCGGCTATGCCGTGACGCGGATCCCCCA TCTCAACAAGGACTTGGCTTTCACCCTGGAAGAGAGGCAGCAGTTGAACATTCATGGATT GTTACCACCTTGCTTCATCAGTCAGGACATCCAGGTCCTTAGAGTAATTAAAAATTTTGA GCGTCTGAACTCTGATTTTGACAGGTATCTTCTCTTAATGGACCTTCAAGATAGAAATGA AAAGCTCTTTTATAAAGTGCTAATGTCTGACATTGAGAAATTCATGCCTATCGTTTATAC TCCCACTGTGGGTCTGGCTTGCCAGCAATACAGTTTAGCATTTCGGAAGCCAAGAGGTCT CTTTATTAGTATCCATGATCGAGGGCATGTTGCTTCAGTTCTTAATGCATGGCCAGAAGA TGTCATCAAGGCTGTCGTGGTGACTGATGGAGAACGTATTCTTGGCCTGGGAGACCTTGG CTGTAACGGGATGGGCATCCCTGTGGGTAAACTGGCACTCTATACAGCATGTGGAGGGGT AAATCCCCAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGCCCCCCGCCGCCGCCACACGCTCCAGCGCGGCTATGCCGTGACGCGGATCCCCCA TCTCAACAAGGACTTGGCTTTCACCCTGGAAGAGAGGCAGCAGTTGAACATTCATGGATT GTTACCACCTTGCTTCATCAGTCAGGACATCCAGGTCCTTAGAGTAATTAAAAATTTTGA GCGTCTGAACTCTGATTTTGACAGGTATCTTCTCTTAATGGACCTTCAAGATAGAAATGA AAAGCTCTTTTATAAAGTGCTAATGTCTGACATTGAGAAATTCATGCCTATCGTTTATAC TCCCACTGTGGGTCTGGCTTGCCAGCAATACAGTTTAGCATTTCGGAAGCCAAGAGGTCT CTTTATTAGTATCCATGATCGAGGGCATGTTGCTTCAGTTCTTAATGCATGGCCAGAAGA TGTCATCAAGGCTGTCGTGGTGACTGATGGAGAACGTATTCTTGGCCTGGGAGACCTTGG CTGTAACGGGATGGGCATCCCTGTGGGTAAACTGGCACTCTATACAGCATGTGGAGGGGT AAATCCCCAAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 195-354, gnl|bosTau2|chr9 (10329372-10329213) | |
| 195-354, gnl|canFam2|chr12 (46778349-46778514) | |
| 195-354, gnl|danRer3|chr9 (31105908-31106070) | |
| 195-354, gnl|dasNov1|scaffold_25454 (1166-1331) | |
| 195-354, gnl|echTel1|scaffold_284708 (77529-77694) | |
| 195-354, gnl|fr1|chrUn (112712224-112712064) | |
| 195-354, gnl|galGal2|chr3 (76148460-76148295) | |
| 195-354, gnl|hg17|chr6 (84164798-84164963) | |
| 195-354, gnl|Hg17|chr6 (84164964-84164805) | |
| 195-354, gnl|loxAfr1|scaffold_3822 (67481-67316) | |
| 195-354, gnl|mm7|chr9 (86781535-86781699) | |
| 195-354, gnl|Mm7|chr9 (86781700-86781541) | |
| 195-354, gnl|monDom2|scaffold_0 (146667000-146666835) | |
| 195-354, gnl|oryCun1|scaffold_211779 (110273-110108) | |
| 195-354, gnl|panTro1|chr5 (85796494-85796659) | |
| 195-354, gnl|rheMac2|chr4 (79425606-79425771) | |
| 195-354, gnl|rn3|chr8 (91957165-91957328) | |
| 195-354, gnl|tetNig1|chr2 (9257019-9256859) | |
| 195-354, gnl|xenTro1|scaffold_73 (2197604-2197442) | |
| 426-546, gnl|bosTau2|chr29 (5580537-5580417) | |
| 426-546, gnl|canFam2|chr21 (16048328-16048156) | |
| 426-546, gnl|danRer3|chr9 (31105415-31105582) | |
| 426-546, gnl|dasNov1|scaffold_29336 (699-512) | |
| 426-546, gnl|echTel1|scaffold_272587 (1279-1467) | |
| 426-546, gnl|fr1|chrUn (203910718-203910887) | |
| 426-546, gnl|galGal2|chr3 (76169835-76169645) | |
| 426-546, gnl|hg17|chr11 (85886650-85886835) | |
| 426-546, gnl|Hg17|chr11 (85886819-85886699) | |
| 426-546, gnl|loxAfr1|scaffold_97549 (4451-4639) | |
| 426-546, gnl|mm7|chr7 (85745176-85744989) | |
| 426-546, gnl|Mm7|chr7 (85745005-85745125) | |
| 426-546, gnl|monDom2|scaffold_46 (1064056-1063871) | |
| 426-546, gnl|oryCun1|scaffold_211779 (155057-154870) | |
| 426-546, gnl|panTro1|chr9 (87543779-87543964) | |
| 426-546, gnl|rheMac2|chr14 (84829618-84829803) | |
| 426-546, gnl|rn3|chr1 (146443064-146442877) | |
| 426-546, gnl|tetNig1|chr2 (9257441-9257272) | |
| 426-546, gnl|xenTro1|scaffold_195 (1417028-1416851) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-354, gnl|bosTau2|chr9 (10329372-10329213) | |
| 195-354, gnl|canFam2|chr12 (46778349-46778514) | |
| 195-354, gnl|danRer3|chr9 (31105908-31106070) | |
| 195-354, gnl|dasNov1|scaffold_25454 (1166-1331) | |
| 195-354, gnl|echTel1|scaffold_284708 (77529-77694) | |
| 195-354, gnl|fr1|chrUn (112712224-112712064) | |
| 195-354, gnl|galGal2|chr3 (76148460-76148295) | |
| 195-354, gnl|hg17|chr6 (84164798-84164963) | |
| 195-354, gnl|Hg17|chr6 (84164964-84164805) | |
| 195-354, gnl|loxAfr1|scaffold_3822 (67481-67316) | |
| 195-354, gnl|mm7|chr9 (86781535-86781699) | |
| 195-354, gnl|Mm7|chr9 (86781700-86781541) | |
| 195-354, gnl|monDom2|scaffold_0 (146667000-146666835) | |
| 195-354, gnl|oryCun1|scaffold_211779 (110273-110108) | |
| 195-354, gnl|panTro1|chr5 (85796494-85796659) | |
| 195-354, gnl|rheMac2|chr4 (79425606-79425771) | |
| 195-354, gnl|rn3|chr8 (91957165-91957328) | |
| 195-354, gnl|tetNig1|chr2 (9257019-9256859) | |
| 195-354, gnl|xenTro1|scaffold_73 (2197604-2197442) | |
| 426-546, gnl|bosTau2|chr29 (5580537-5580417) | |
| 426-546, gnl|canFam2|chr21 (16048328-16048156) | |
| 426-546, gnl|danRer3|chr9 (31105415-31105582) | |
| 426-546, gnl|dasNov1|scaffold_29336 (699-512) | |
| 426-546, gnl|echTel1|scaffold_272587 (1279-1467) | |
| 426-546, gnl|fr1|chrUn (203910718-203910887) | |
| 426-546, gnl|galGal2|chr3 (76169835-76169645) | |
| 426-546, gnl|hg17|chr11 (85886650-85886835) | |
| 426-546, gnl|Hg17|chr11 (85886819-85886699) | |
| 426-546, gnl|loxAfr1|scaffold_97549 (4451-4639) | |
| 426-546, gnl|mm7|chr7 (85745176-85744989) | |
| 426-546, gnl|Mm7|chr7 (85745005-85745125) | |
| 426-546, gnl|monDom2|scaffold_46 (1064056-1063871) | |
| 426-546, gnl|oryCun1|scaffold_211779 (155057-154870) | |
| 426-546, gnl|panTro1|chr9 (87543779-87543964) | |
| 426-546, gnl|rheMac2|chr14 (84829618-84829803) | |
| 426-546, gnl|rn3|chr1 (146443064-146442877) | |
| 426-546, gnl|tetNig1|chr2 (9257441-9257272) | |
| 426-546, gnl|xenTro1|scaffold_195 (1417028-1416851) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.639877) | |
| fat (0.147427) |