Non-Coding RNA Search

Ss1.1-rcbr0_005320.5

Sequence:


               
               CAGAAGAGGCTCCTCCAGGCTCCATCTCTGATGACCCTGGTGTAGCTTGGGACTTGATGG
CCTCTGGATTCCTCATCCTGACTGGAGGGGTGGACCAGAGTGGGCGAGCCCTGCTGACCA
TTACCCCACCGTGCTCTCCTGAGGAGCCCCCACCCTCCCAAGAGGCGCTGAGCACTGCTC
TTCATTACCTGCACTCACTGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAGAGGCTCCTCCAGGCTCCATCTCTGATGACCCTGGTGTAGCTTGGGACTTGATGG
CCTCTGGATTCCTCATCCTGACTGGAGGGGTGGACCAGAGTGGGCGAGCCCTGCTGACCA
TTACCCCACCGTGCTCTCCTGAGGAGCCCCCACCCTCCCAAGAGGCGCTGAGCACTGCTC
TTCATTACCTGCACTCACTGCTCA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               84-204, gnl|bosTau2|chr10 (15616413-15616533)
               

               
               84-204, gnl|canFam2|chr15 (21171373-21171861)
               

               
               84-204, gnl|dasNov1|scaffold_708 (118313-118764)
               

               
               84-204, gnl|hg17|chr14 (20613541-20614036)
               

               
               84-204, gnl|Hg17|chr14 (20613643-20613763)
               

               
               84-204, gnl|mm7|chr14 (47324485-47324959)
               

               
               84-204, gnl|Mm7|chr14 (47324583-47324709)
               

               
               84-204, gnl|monDom2|scaffold_12 (29401507-29401061)
               

               
               84-204, gnl|oryCun1|scaffold_172423 (49376-48903)
               

               
               84-204, gnl|panTro1|chrUn_random (21910522-21911017)
               

               
               84-204, gnl|rheMac2|chr7 (83789296-83789791)
               

               
               84-204, gnl|rn3|chr15 (27432396-27432840)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-204, gnl|bosTau2|chr10 (15616413-15616533)
               

               
               84-204, gnl|canFam2|chr15 (21171373-21171861)
               

               
               84-204, gnl|dasNov1|scaffold_708 (118313-118764)
               

               
               84-204, gnl|hg17|chr14 (20613541-20614036)
               

               
               84-204, gnl|Hg17|chr14 (20613643-20613763)
               

               
               84-204, gnl|mm7|chr14 (47324485-47324959)
               

               
               84-204, gnl|Mm7|chr14 (47324583-47324709)
               

               
               84-204, gnl|monDom2|scaffold_12 (29401507-29401061)
               

               
               84-204, gnl|oryCun1|scaffold_172423 (49376-48903)
               

               
               84-204, gnl|panTro1|chrUn_random (21910522-21911017)
               

               
               84-204, gnl|rheMac2|chr7 (83789296-83789791)
               

               
               84-204, gnl|rn3|chr15 (27432396-27432840)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.255951)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.255951)

	84-204, gnl\|bosTau2\|chr10 (15616413-15616533)
	84-204, gnl\|canFam2\|chr15 (21171373-21171861)
	84-204, gnl\|dasNov1\|scaffold_708 (118313-118764)
	84-204, gnl\|hg17\|chr14 (20613541-20614036)
	84-204, gnl\|Hg17\|chr14 (20613643-20613763)
	84-204, gnl\|mm7\|chr14 (47324485-47324959)
	84-204, gnl\|Mm7\|chr14 (47324583-47324709)
	84-204, gnl\|monDom2\|scaffold_12 (29401507-29401061)
	84-204, gnl\|oryCun1\|scaffold_172423 (49376-48903)
	84-204, gnl\|panTro1\|chrUn_random (21910522-21911017)
	84-204, gnl\|rheMac2\|chr7 (83789296-83789791)
	84-204, gnl\|rn3\|chr15 (27432396-27432840)