Ss1.1-rcbr0_006218.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGGAATCGAATTCGCAGACGTGGAACCTGTTTCACACAACTGCGACCTGAAGGGAAAA AAGAAGCAAATGATACCAAGAAAAGCTCATAACAGAGATCTATTCAACAGAAGTGTTCGG ATGAAAATACAGTGAGATGAGTCAGAAAGTAGCTAAGGAGGGCCCCAGACTCTCCAAGAA CCAGAAGTTCTCCGAGCACTTCAGCATACATTGCTGCCCGCCATTCACCTTCCTCAACTC CAAACGCGAGATTGTGGATCGCAAATACAGCATTTGTAAAAGTGGCTGCTTCTACCAGAA GAAAGAGGAGGACTGGATCTGCTGTGCCTGCCAGAAGACCAGATTGAAAAGGAAGAGCAA GCCCACCCCTCGGAAGAAGTGATGGAGGAGTTTCAGGTGAATGGACGGCCTCAGCTCTCA GTCTCTCTGCTTCTGGACCCACATGCCCTTGGACAGGTTATCTGGCTTTGAATATGATGC AGGGGCAGACACCTGCTGATGCAGCAACTGCCAATGCCCACAGTCTCCCAGCAGCCCAAA CAGAGGGCCAGGCACCAGTCGTGGGGGGTCCCCCATCAAAGCTACTAGGTTCTGGTAACA CCATCTCTTCCCTTTTGTTCCCTAGCCCTAAGGTTAGTAGCTGCTTCCTGTGTTAACTAA CAACCGGTTGTCTCAATGGCCCTCCTTCAGCCTTACCAAACCTATGTACCCAATTCCCTG CATTAAATCCCCTCATTTGAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGGAATCGAATTCGCAGACGTGGAACCTGTTTCACACAACTGCGACCTGAAGGGAAAA AAGAAGCAAATGATACCAAGAAAAGCTCATAACAGAGATCTATTCAACAGAAGTGTTCGG ATGAAAATACAGTGAGATGAGTCAGAAAGTAGCTAAGGAGGGCCCCAGACTCTCCAAGAA CCAGAAGTTCTCCGAGCACTTCAGCATACATTGCTGCCCGCCATTCACCTTCCTCAACTC CAAACGCGAGATTGTGGATCGCAAATACAGCATTTGTAAAAGTGGCTGCTTCTACCAGAA GAAAGAGGAGGACTGGATCTGCTGTGCCTGCCAGAAGACCAGATTGAAAAGGAAGAGCAA GCCCACCCCTCGGAAGAAGTGATGGAGGAGTTTCAGGTGAATGGACGGCCTCAGCTCTCA GTCTCTCTGCTTCTGGACCCACATGCCCTTGGACAGGTTATCTGGCTTTGAATATGATGC AGGGGCAGACACCTGCTGATGCAGCAACTGCCAATGCCCACAGTCTCCCAGCAGCCCAAA CAGAGGGCCAGGCACCAGTCGTGGGGGGTCCCCCATCAAAGCTACTAGGTTCTGGTAACA CCATCTCTTCCCTTTTGTTCCCTAGCCCTAAGGTTAGTAGCTGCTTCCTGTGTTAACTAA CAACCGGTTGTCTCAATGGCCCTCCTTCAGCCTTACCAAACCTATGTACCCAATTCCCTG CATTAAATCCCCTCATTTGAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 560-677, + strand, RNAz p=0.505194 | |
| 595-738, + strand, RNAz p=0.893936 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 560-677, + strand, RNAz p=0.505194 | |
| 595-738, + strand, RNAz p=0.893936 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_182934, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 130-342, gnl|bosTau2|chr22 (10132631-10132843) | |
| 130-342, gnl|canFam2|chr23 (12159026-12159275) | |
| 130-342, gnl|danRer3|chr24 (9015563-9015798) | |
| 130-342, gnl|echTel1|scaffold_255720 (4342-4572) | |
| 130-342, gnl|fr1|chrUn (287301305-287301030) | |
| 130-342, gnl|galGal2|chr2 (43195244-43195007) | |
| 130-342, gnl|hg17|chr3 (39518556-39518806) | |
| 130-342, gnl|Hg17|chr3 (39518558-39518770) | |
| 130-342, gnl|loxAfr1|scaffold_28688 (24486-24237) | |
| 130-342, gnl|mm7|chr9 (119863691-119863927) | |
| 130-342, gnl|Mm7|chr9 (119863693-119863905) | |
| 130-342, gnl|monDom2|scaffold_7 (62810375-62810610) | |
| 130-342, gnl|oryCun1|scaffold_194572 (9445-9196) | |
| 130-342, gnl|panTro1|chr2 (40648112-40648362) | |
| 130-342, gnl|rheMac2|chr2 (96977351-96977102) | |
| 130-342, gnl|rn3|chr8 (125155353-125155589) | |
| 130-342, gnl|tetNig1|chr6 (1342873-1342637) | |
| 130-342, gnl|xenTro1|scaffold_946 (152495-152258) | |
| 521-742, gnl|bosTau2|chr22 (10133304-10133531) | |
| 521-742, gnl|canFam2|chr23 (12159642-12160030) | |
| 521-742, gnl|echTel1|scaffold_255720 (4921-5316) | |
| 521-742, gnl|hg17|chr3 (39519219-39519611) | |
| 521-742, gnl|Hg17|chr3 (39519298-39519522) | |
| 521-742, gnl|loxAfr1|scaffold_28688 (23879-23483) | |
| 521-742, gnl|Mm7|chr9 (119864347-119864557) | |
| 521-742, gnl|oryCun1|scaffold_194572 (8880-8487) | |
| 521-742, gnl|panTro1|chr2 (40648760-40649152) | |
| 521-742, gnl|rheMac2|chr2 (96976719-96976327) | |
| 521-742, gnl|rn3|chr8 (125155928-125156296) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-342, gnl|bosTau2|chr22 (10132631-10132843) | |
| 130-342, gnl|canFam2|chr23 (12159026-12159275) | |
| 130-342, gnl|danRer3|chr24 (9015563-9015798) | |
| 130-342, gnl|echTel1|scaffold_255720 (4342-4572) | |
| 130-342, gnl|fr1|chrUn (287301305-287301030) | |
| 130-342, gnl|galGal2|chr2 (43195244-43195007) | |
| 130-342, gnl|hg17|chr3 (39518556-39518806) | |
| 130-342, gnl|Hg17|chr3 (39518558-39518770) | |
| 130-342, gnl|loxAfr1|scaffold_28688 (24486-24237) | |
| 130-342, gnl|mm7|chr9 (119863691-119863927) | |
| 130-342, gnl|Mm7|chr9 (119863693-119863905) | |
| 130-342, gnl|monDom2|scaffold_7 (62810375-62810610) | |
| 130-342, gnl|oryCun1|scaffold_194572 (9445-9196) | |
| 130-342, gnl|panTro1|chr2 (40648112-40648362) | |
| 130-342, gnl|rheMac2|chr2 (96977351-96977102) | |
| 130-342, gnl|rn3|chr8 (125155353-125155589) | |
| 130-342, gnl|tetNig1|chr6 (1342873-1342637) | |
| 130-342, gnl|xenTro1|scaffold_946 (152495-152258) | |
| 521-742, gnl|bosTau2|chr22 (10133304-10133531) | |
| 521-742, gnl|canFam2|chr23 (12159642-12160030) | |
| 521-742, gnl|echTel1|scaffold_255720 (4921-5316) | |
| 521-742, gnl|hg17|chr3 (39519219-39519611) | |
| 521-742, gnl|Hg17|chr3 (39519298-39519522) | |
| 521-742, gnl|loxAfr1|scaffold_28688 (23879-23483) | |
| 521-742, gnl|Mm7|chr9 (119864347-119864557) | |
| 521-742, gnl|oryCun1|scaffold_194572 (8880-8487) | |
| 521-742, gnl|panTro1|chr2 (40648760-40649152) | |
| 521-742, gnl|rheMac2|chr2 (96976719-96976327) | |
| 521-742, gnl|rn3|chr8 (125155928-125156296) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cbr (6.52675) | |
| fbs (1.57812) | |
| hyp (0.999857) | |
| fhi (0.847889) | |
| fce (0.814775) | |
| fcc (0.197785) | |
| cov (0.132153) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (6.52675) | |
| fbs (1.57812) | |
| hyp (0.999857) | |
| fhi (0.847889) | |
| fce (0.814775) | |
| fcc (0.197785) | |
| cov (0.132153) |