Ss1.1-rcbr0_006333.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGCAGCGGCGGGCCGGTCTGCGGCGCGGGCCTCGCGGCGGCGACAGCCTCGCGGCGGG AAAGATGCTGCAGTCCCTGGCCGGCAGCTCGTGCGTGCGCCTGGTGGAGCGGCACCGCTC GGCCTGGTGCTTCGGCTTCCTGGTACTCGGCTACCTGCTCTACCTGGTCTTCGGCGCCGT AGTCTTCTCGTCTGTAGAGCTGCCCTACGAGGACCTGCTGCGCCAGGAGCTGCGCAAGCT GAAGCGGCGCTTCCTGGAGGAGCACGAGTGCCTCTCGGAGCCGCAGCTCGAGCAGTTCCT GGGCCGGGTGCTGGCAGCTAGCAACTACGGCGTGTCGGTGCTCAGCAACGCCTCGGGCAA CTGGAACTGGGACTTCACCTCCGCCCTTTTCTTCGCCAGCACCGTGCTCTCCACCACAGG TTACGGCCACACTGTGCCCCTGTCCGACGGGGGCAAGGCCTTCTGCATCATCTACTCGGT CATCGGCATCCCTTTCACCCTCCTCTTCCTGACGGCCGTGGTCCAGCGCGTTACCATCCA TGTCACCCGACGGCCGGTCCTCTACTTCCACATCCGCTGGGGCTTCTCCAAGCAGGCAGT GGCCGTGGTCCACGCCGTCCTCCTGGGCGTGGTCACCGTGTCTTGCTTCTTCTTCATCCC AGCTGCAGTGTTCTCCGTCCTGGAGGATGACTGGAACTTCCTGGAATCCTTTTACTTCTG TTTTATTTCCCTGAGCACCATTGGCCTCGGGGATTATGTTCCTGGAGAGGGCTACAATCA GAAATTCAGAGAGCTTTACAAGATTGGGATCACGTGTTACCTGCTCCTTGGCCTCATCGC CATGCTGGTGGTTCTGGAAACCTTCTGTGAGCTCCACGAGCTGAAAAAATTCAGGAAAAT GTTCTACGTGAAGAAGGACAAGGATGAGGACCAGGTACACATCATCGAGCATGACCAGCT GTCCTTCTCCTCCATCACGGACCCAGCTGCCGGCACCAAGGAGGAGCAGAAGCAGAACGA GCCTTTTGTGGCCCCCTCGGCACCTGCCTTGACTGATGGCGCCACAAGCCAGTAGGCTTC GGCTCTGCAGCGCTGTCCCCGGGTGCAGGGCCAGTGGGAAGAGGCTTTGTTTTGTTCATT TTTATGAGATTGTAAAAACCAAGGTGATATTTTAATAAATAGCTACTGTTTGCAACATTT TTTTTGTAAAATGGAACAAAGGAAGCTTTTACTCCAGAAGGCTGTCTAAAATCTGAGGAA ATGGCATATGTACCCGTATTTCATATGTGACAAAATTATTGCAACTTTACTAATAGGTGA AGAATCTTTGAAGCAGCATCCCACTGTGGATAGAAGCAGATTTTCTACTTTTACTTAGGG ACTTTGGGATTTGCATTTAAATCATTTAGCTGACGGTTAAATGGCAACATTTATATCTAA AAGCAAAAAAAAAAAGGCGTAGAGATGTGTTTTATAAATAAGTTTAAGTGTACTGGTTTG CATGTGCCCCAAATCATTATTTTTGTAGACTCTAAGTTAAACTTCTTATTTATAATGAAT AGATAACCATTAACTGTACATATAAAGTATAAATATGTTTATATCCTGTATATCAGTTTA GGTCACTAGATCCCAGCATTCTTCTTCACCCAAGATTGTAGAGATTTTCCCTTTTGATTT CACTTTATACTGAAGAATCAAACGTTGCTGCAATAAATTAAGGGGAATATTACAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGCAGCGGCGGGCCGGTCTGCGGCGCGGGCCTCGCGGCGGCGACAGCCTCGCGGCGGG AAAGATGCTGCAGTCCCTGGCCGGCAGCTCGTGCGTGCGCCTGGTGGAGCGGCACCGCTC GGCCTGGTGCTTCGGCTTCCTGGTACTCGGCTACCTGCTCTACCTGGTCTTCGGCGCCGT AGTCTTCTCGTCTGTAGAGCTGCCCTACGAGGACCTGCTGCGCCAGGAGCTGCGCAAGCT GAAGCGGCGCTTCCTGGAGGAGCACGAGTGCCTCTCGGAGCCGCAGCTCGAGCAGTTCCT GGGCCGGGTGCTGGCAGCTAGCAACTACGGCGTGTCGGTGCTCAGCAACGCCTCGGGCAA CTGGAACTGGGACTTCACCTCCGCCCTTTTCTTCGCCAGCACCGTGCTCTCCACCACAGG TTACGGCCACACTGTGCCCCTGTCCGACGGGGGCAAGGCCTTCTGCATCATCTACTCGGT CATCGGCATCCCTTTCACCCTCCTCTTCCTGACGGCCGTGGTCCAGCGCGTTACCATCCA TGTCACCCGACGGCCGGTCCTCTACTTCCACATCCGCTGGGGCTTCTCCAAGCAGGCAGT GGCCGTGGTCCACGCCGTCCTCCTGGGCGTGGTCACCGTGTCTTGCTTCTTCTTCATCCC AGCTGCAGTGTTCTCCGTCCTGGAGGATGACTGGAACTTCCTGGAATCCTTTTACTTCTG TTTTATTTCCCTGAGCACCATTGGCCTCGGGGATTATGTTCCTGGAGAGGGCTACAATCA GAAATTCAGAGAGCTTTACAAGATTGGGATCACGTGTTACCTGCTCCTTGGCCTCATCGC CATGCTGGTGGTTCTGGAAACCTTCTGTGAGCTCCACGAGCTGAAAAAATTCAGGAAAAT GTTCTACGTGAAGAAGGACAAGGATGAGGACCAGGTACACATCATCGAGCATGACCAGCT GTCCTTCTCCTCCATCACGGACCCAGCTGCCGGCACCAAGGAGGAGCAGAAGCAGAACGA GCCTTTTGTGGCCCCCTCGGCACCTGCCTTGACTGATGGCGCCACAAGCCAGTAGGCTTC GGCTCTGCAGCGCTGTCCCCGGGTGCAGGGCCAGTGGGAAGAGGCTTTGTTTTGTTCATT TTTATGAGATTGTAAAAACCAAGGTGATATTTTAATAAATAGCTACTGTTTGCAACATTT TTTTTGTAAAATGGAACAAAGGAAGCTTTTACTCCAGAAGGCTGTCTAAAATCTGAGGAA ATGGCATATGTACCCGTATTTCATATGTGACAAAATTATTGCAACTTTACTAATAGGTGA AGAATCTTTGAAGCAGCATCCCACTGTGGATAGAAGCAGATTTTCTACTTTTACTTAGGG ACTTTGGGATTTGCATTTAAATCATTTAGCTGACGGTTAAATGGCAACATTTATATCTAA AAGCAAAAAAAAAAAGGCGTAGAGATGTGTTTTATAAATAAGTTTAAGTGTACTGGTTTG CATGTGCCCCAAATCATTATTTTTGTAGACTCTAAGTTAAACTTCTTATTTATAATGAAT AGATAACCATTAACTGTACATATAAAGTATAAATATGTTTATATCCTGTATATCAGTTTA GGTCACTAGATCCCAGCATTCTTCTTCACCCAAGATTGTAGAGATTTTCCCTTTTGATTT CACTTTATACTGAAGAATCAAACGTTGCTGCAATAAATTAAGGGGAATATTACAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1555-1668, - strand, RNAz p=0.91056 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1555-1668, - strand, RNAz p=0.91056 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 414-770, gnl|bosTau2|chr18 (41167178-41166822) | |
| 414-770, gnl|canFam2|chr1 (117580582-117580224) | |
| 414-770, gnl|danRer3|chr17 (43488702-43488325) | |
| 414-770, gnl|dasNov1|scaffold_155802 (3871-3525) | |
| 414-770, gnl|echTel1|scaffold_307877 (957-1311) | |
| 414-770, gnl|fr1|chrUn (235268582-235268947) | |
| 414-770, gnl|galGal2|chr3 (34756201-34755839) | |
| 414-770, gnl|hg17|chr19 (43509045-43509414) | |
| 414-770, gnl|Hg17|chr19 (43509067-43509423) | |
| 414-770, gnl|loxAfr1|scaffold_14252 (53141-52784) | |
| 414-770, gnl|mm7|chr7 (26165351-26165000) | |
| 414-770, gnl|Mm7|chr7 (26165345-26164989) | |
| 414-770, gnl|monDom2|scaffold_139 (279315-279693) | |
| 414-770, gnl|oryCun1|scaffold_213361 (263201-262846) | |
| 414-770, gnl|panTro1|chr20 (40411768-40412137) | |
| 414-770, gnl|rheMac2|chr19 (44659814-44660183) | |
| 414-770, gnl|rn3|chr1 (84439639-84439292) | |
| 414-770, gnl|tetNig1|chrUn_random (85551142-85550796) | |
| 414-770, gnl|xenTro1|scaffold_792 (285555-285194) | |
| 811-1157, gnl|bosTau2|chr24 (202522-202872) | |
| 811-1157, gnl|Hg17|chr1 (230113747-230114099) | |
| 811-1157, gnl|Mm7|chr8 (124617091-124617412) | |
| 1201-1734, gnl|bosTau2|chr24 (202880-203420) | |
| 1201-1734, gnl|Hg17|chr1 (230114132-230114700) | |
| 1201-1734, gnl|Mm7|chr8 (124617441-124617993) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 414-770, gnl|bosTau2|chr18 (41167178-41166822) | |
| 414-770, gnl|canFam2|chr1 (117580582-117580224) | |
| 414-770, gnl|danRer3|chr17 (43488702-43488325) | |
| 414-770, gnl|dasNov1|scaffold_155802 (3871-3525) | |
| 414-770, gnl|echTel1|scaffold_307877 (957-1311) | |
| 414-770, gnl|fr1|chrUn (235268582-235268947) | |
| 414-770, gnl|galGal2|chr3 (34756201-34755839) | |
| 414-770, gnl|hg17|chr19 (43509045-43509414) | |
| 414-770, gnl|Hg17|chr19 (43509067-43509423) | |
| 414-770, gnl|loxAfr1|scaffold_14252 (53141-52784) | |
| 414-770, gnl|mm7|chr7 (26165351-26165000) | |
| 414-770, gnl|Mm7|chr7 (26165345-26164989) | |
| 414-770, gnl|monDom2|scaffold_139 (279315-279693) | |
| 414-770, gnl|oryCun1|scaffold_213361 (263201-262846) | |
| 414-770, gnl|panTro1|chr20 (40411768-40412137) | |
| 414-770, gnl|rheMac2|chr19 (44659814-44660183) | |
| 414-770, gnl|rn3|chr1 (84439639-84439292) | |
| 414-770, gnl|tetNig1|chrUn_random (85551142-85550796) | |
| 414-770, gnl|xenTro1|scaffold_792 (285555-285194) | |
| 811-1157, gnl|bosTau2|chr24 (202522-202872) | |
| 811-1157, gnl|Hg17|chr1 (230113747-230114099) | |
| 811-1157, gnl|Mm7|chr8 (124617091-124617412) | |
| 1201-1734, gnl|bosTau2|chr24 (202880-203420) | |
| 1201-1734, gnl|Hg17|chr1 (230114132-230114700) | |
| 1201-1734, gnl|Mm7|chr8 (124617441-124617993) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cbr (4.73509) | |
| tra (0.492368) | |
| fco (0.471624) | |
| ret (0.3862) | |
| fce (0.271592) | |
| pla (0.267344) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| col (0.195008) | |
| rec (0.17307) | |
| cki (0.165235) | |
| mga (0.160205) | |
| cst (0.140036) | |
| ute (0.132784) | |
| cov (0.132153) | |
| bla (0.124347) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (4.73509) | |
| tra (0.492368) | |
| fco (0.471624) | |
| ret (0.3862) | |
| fce (0.271592) | |
| pla (0.267344) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| col (0.195008) | |
| rec (0.17307) | |
| cki (0.165235) | |
| mga (0.160205) | |
| cst (0.140036) | |
| ute (0.132784) | |
| cov (0.132153) | |
| bla (0.124347) |