Non-Coding RNA Search

Ss1.1-rcbr0_006348.5

Sequence:


               
               GAATTCGGATTCGAATTCCCGCGAGGCCCGCGCGGCAACCCCTGCAAGGCGGCCCGCGGC
CGGGGGCTCCGGCGAGCGAGGACCATGCGGGACCCGGGGGCGGCGCCCGACTGCTGCGGG
GGCTTCGGCAACCTGGACCTCAGGCAGACCTCTGCGTTATGACCAGGTTGCTGGGCTACG
TGGACCCCTCTGATGCCCGCTTCGTGGCTGCGGTTCTCACCATCGCTTTCAATCCACTCT
TCTGGAATGTGGTCGCCAGATGGGAACACAAGACCCGCAAGCTGAGCAGGGCCTTCGGGT
CACCCCGCCTGGCCTGCTACACCCTGGGCGGCGCCATCCTGCTCCTCAACTTACTGCGCT
CCCACTGCTTCACGCAGGCCATGCTGAGCCAGCCCCAGATGGAGAGCCTGGGCGGCCCCA
CGGGCTACCGCCTGGGCCTGGCGCTCCTGGGCGTGGGCAGCGTCTTCGTACTTTCCAGTT
TCCTGGCGCTGGGCTTCACCGGGACCTTCCTAGGCGACTACTTCGGGATCCTCATGGAGG
CGAGAGTGACCCGGTTCCCGTTCAGCGTCCTGGACAACCCCATGTACTGGGGCAGCACGG
CCGTCTACCTGGGCTGGGCCCTCATGCACGCCAGCCCCACCGGCCTGCTGCTGACGCTGG
TGGTGGCTGCCATCTACAAGCTCGCCATCCTGTTCGAGGAGCCCTTCACCGCCGAGATCT
ACCGGCAGAGAGGCTCCCAGGCCCGCAAGAGAAGCTGACGGCGCCCCCGGCCCTGAGCAC
CCCGCCCTGCGAGAAGGAGAGGGCGCCAGGCACAGGCGTCCAGTGCCTTGGAAACGGCCT
CTGGGGCCCTGGACGGGCGCCGTGTGGTCCCCGAGCCCCCTGCCCTGCTGCCGCCACGTC
CTGACTCGCCAATAAAGGCGCCTAACACCAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTCGGATTCGAATTCCCGCGAGGCCCGCGCGGCAACCCCTGCAAGGCGGCCCGCGGC
CGGGGGCTCCGGCGAGCGAGGACCATGCGGGACCCGGGGGCGGCGCCCGACTGCTGCGGG
GGCTTCGGCAACCTGGACCTCAGGCAGACCTCTGCGTTATGACCAGGTTGCTGGGCTACG
TGGACCCCTCTGATGCCCGCTTCGTGGCTGCGGTTCTCACCATCGCTTTCAATCCACTCT
TCTGGAATGTGGTCGCCAGATGGGAACACAAGACCCGCAAGCTGAGCAGGGCCTTCGGGT
CACCCCGCCTGGCCTGCTACACCCTGGGCGGCGCCATCCTGCTCCTCAACTTACTGCGCT
CCCACTGCTTCACGCAGGCCATGCTGAGCCAGCCCCAGATGGAGAGCCTGGGCGGCCCCA
CGGGCTACCGCCTGGGCCTGGCGCTCCTGGGCGTGGGCAGCGTCTTCGTACTTTCCAGTT
TCCTGGCGCTGGGCTTCACCGGGACCTTCCTAGGCGACTACTTCGGGATCCTCATGGAGG
CGAGAGTGACCCGGTTCCCGTTCAGCGTCCTGGACAACCCCATGTACTGGGGCAGCACGG
CCGTCTACCTGGGCTGGGCCCTCATGCACGCCAGCCCCACCGGCCTGCTGCTGACGCTGG
TGGTGGCTGCCATCTACAAGCTCGCCATCCTGTTCGAGGAGCCCTTCACCGCCGAGATCT
ACCGGCAGAGAGGCTCCCAGGCCCGCAAGAGAAGCTGACGGCGCCCCCGGCCCTGAGCAC
CCCGCCCTGCGAGAAGGAGAGGGCGCCAGGCACAGGCGTCCAGTGCCTTGGAAACGGCCT
CTGGGGCCCTGGACGGGCGCCGTGTGGTCCCCGAGCCCCCTGCCCTGCTGCCGCCACGTC
CTGACTCGCCAATAAAGGCGCCTAACACCAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7YRH5_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7YRH5_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               140-253, gnl|bosTau2|chr19 (26401565-26401678)
               

               
               140-253, gnl|Hg17|chr17 (17421070-17420957)
               

               
               140-253, gnl|Mm7|chr11 (60113382-60113269)
               


               
               361-514, gnl|bosTau2|chr19 (26421743-26421896)
               

               
               361-514, gnl|Hg17|chr17 (17356700-17356547)
               

               
               361-514, gnl|Mm7|chr11 (60058550-60058396)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-253, gnl|bosTau2|chr19 (26401565-26401678)
               

               
               140-253, gnl|Hg17|chr17 (17421070-17420957)
               

               
               140-253, gnl|Mm7|chr11 (60113382-60113269)
               


               
               361-514, gnl|bosTau2|chr19 (26421743-26421896)
               

               
               361-514, gnl|Hg17|chr17 (17356700-17356547)
               

               
               361-514, gnl|Mm7|chr11 (60058550-60058396)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cbr (5.24699)
               

               
               fli (1.62305)
               

               
               eli (0.303628)
               

               
               fce (0.271592)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (5.24699)
               

               
               fli (1.62305)
               

               
               eli (0.303628)
               

               
               fce (0.271592)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	140-253, gnl\|bosTau2\|chr19 (26401565-26401678)
	140-253, gnl\|Hg17\|chr17 (17421070-17420957)
	140-253, gnl\|Mm7\|chr11 (60113382-60113269)

	361-514, gnl\|bosTau2\|chr19 (26421743-26421896)
	361-514, gnl\|Hg17\|chr17 (17356700-17356547)
	361-514, gnl\|Mm7\|chr11 (60058550-60058396)

	cbr (5.24699)
	fli (1.62305)
	eli (0.303628)
	fce (0.271592)
	jej (0.197844)
	eje (0.197668)
	fty (0.17584)
	ill (0.175593)
	cag (0.151194)
	nca (0.136874)
	pla (0.133672)
	cov (0.132153)
	eru (0.120048)
	jca (0.11396)