Ss1.1-rcbr0_007384.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCTGGGGAAGGTTTGGTCCGCCACCCCCCACGGCGTCCTGTGTTGCGAGAGGAGGCGG GAGGGACGGAAACTCGAGCGGTACGTAAGGCGCTCAGGACTCTGCGAGGCACGTGACGTC CGCGAAGGCAGAAATGTCTTTCCTCCAGGATCCAAGTTTTGTCACCATGGGAATGTGGTC CATTGGTGCGGGAGCTATAGGGGCTGCTGCCTTGGCACTGCTTCTGGCCAACACCGACAT ATTTCTGCCCAAGCCCCAGAGAGCAACGCTGGATTATCTGGAGGATATAGACCTGAAAAC ACTGGAGAAGGAGCCAAAGACTTTCAAAGCAAAGGCGCTCTGGGAAAAGACTGGAGCTGT GATTATGGCTGTGCGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGAGGCTGCGGACCTGTC TTCCCTGAAGCCCAGGTTGGATGAGCTGGGCGTCCCCCTCTATGCAGTGGTCAAGGAGCA GGTGAAGAATGAAGTGAAGGACTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTGGATGA AGAGAAAAAGTTCTATGGTCCCCAAAGGCGGAAGATGATGTTTATGGGGTTTGTCCGTCT GGGTGTCTGGTACAACTTCTTCCGGGCCCGGAGTGGAGGCTTTTCTGGAAACCTGGAAGG CGAAGGCTTCGTCCTTGGGGGAGTTTTTGTGGTGGGACCAGGAAAGCAGGGCATTCTTCT TGAGCACCGAGAAAAAGAATTTGGAGACAAAGTAAATCCAGTTTCTGTTCTGGAAGCTGT CAGGAAGATCAAACCACACACTTCAGCCTCAGAGAAAAAATGATCGTGTGCAACTACCCA GCTCAGGGATAACTAGTGATCTCACCTGTGTTCACAGGATGTGTTGTTTCCACTTCTGTC CCTAAGGCGTTAGAAACCCACTTAAGCCATATTCTCCATATAGACCATTAACATATCTTA ATATTGTTCTGTTTAGGCCTAATAAAACAAAATAGCCCCCAAACAAGACTGTTAAAAATC TTAAGAAACTAGTGAGGATTATTTCAGGTAAAACCTGGAAAATCTGAGGCTTAAAGTTGA CGGCTATACCTGATGACAAACATATGTGGTGTTTGAGTGCTTTTATTTGAGATTATTTTT ATTTCCCTGTCTTTAAAAATCTAATAAATTTGATAATTGACTTGAAGATTAAGGATATAA GATTTTTGGCTTGTGTTTTCAACGAATGATTTATTATATAATGTTAAAGTAATCATATAA AAGAATTGATGTGCTTTGGATGGCTTGATAAAGGTAAATTATGAAGTGCAATCTTTTATT TTTCATTGCCTTCCATTCTAATCTTGGAGATTTGTTTTTTTTCTAGAAGAAATGATCATC TCTGGCTTTAATAAAATTATGTATCAGAAATTTCCCACATATACAAGTTTTTCTGTTAAG AGTAACAATAAAAAATATTTACCATAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCTGGGGAAGGTTTGGTCCGCCACCCCCCACGGCGTCCTGTGTTGCGAGAGGAGGCGG GAGGGACGGAAACTCGAGCGGTACGTAAGGCGCTCAGGACTCTGCGAGGCACGTGACGTC CGCGAAGGCAGAAATGTCTTTCCTCCAGGATCCAAGTTTTGTCACCATGGGAATGTGGTC CATTGGTGCGGGAGCTATAGGGGCTGCTGCCTTGGCACTGCTTCTGGCCAACACCGACAT ATTTCTGCCCAAGCCCCAGAGAGCAACGCTGGATTATCTGGAGGATATAGACCTGAAAAC ACTGGAGAAGGAGCCAAAGACTTTCAAAGCAAAGGCGCTCTGGGAAAAGACTGGAGCTGT GATTATGGCTGTGCGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGAGGCTGCGGACCTGTC TTCCCTGAAGCCCAGGTTGGATGAGCTGGGCGTCCCCCTCTATGCAGTGGTCAAGGAGCA GGTGAAGAATGAAGTGAAGGACTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTGGATGA AGAGAAAAAGTTCTATGGTCCCCAAAGGCGGAAGATGATGTTTATGGGGTTTGTCCGTCT GGGTGTCTGGTACAACTTCTTCCGGGCCCGGAGTGGAGGCTTTTCTGGAAACCTGGAAGG CGAAGGCTTCGTCCTTGGGGGAGTTTTTGTGGTGGGACCAGGAAAGCAGGGCATTCTTCT TGAGCACCGAGAAAAAGAATTTGGAGACAAAGTAAATCCAGTTTCTGTTCTGGAAGCTGT CAGGAAGATCAAACCACACACTTCAGCCTCAGAGAAAAAATGATCGTGTGCAACTACCCA GCTCAGGGATAACTAGTGATCTCACCTGTGTTCACAGGATGTGTTGTTTCCACTTCTGTC CCTAAGGCGTTAGAAACCCACTTAAGCCATATTCTCCATATAGACCATTAACATATCTTA ATATTGTTCTGTTTAGGCCTAATAAAACAAAATAGCCCCCAAACAAGACTGTTAAAAATC TTAAGAAACTAGTGAGGATTATTTCAGGTAAAACCTGGAAAATCTGAGGCTTAAAGTTGA CGGCTATACCTGATGACAAACATATGTGGTGTTTGAGTGCTTTTATTTGAGATTATTTTT ATTTCCCTGTCTTTAAAAATCTAATAAATTTGATAATTGACTTGAAGATTAAGGATATAA GATTTTTGGCTTGTGTTTTCAACGAATGATTTATTATATAATGTTAAAGTAATCATATAA AAGAATTGATGTGCTTTGGATGGCTTGATAAAGGTAAATTATGAAGTGCAATCTTTTATT TTTCATTGCCTTCCATTCTAATCTTGGAGATTTGTTTTTTTTCTAGAAGAAATGATCATC TCTGGCTTTAATAAAATTATGTATCAGAAATTTCCCACATATACAAGTTTTTCTGTTAAG AGTAACAATAAAAAATATTTACCATAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 129-247, + strand, RNAz p=0.843087 | |
| 424-541, - strand, RNAz p=0.685972 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 129-247, + strand, RNAz p=0.843087 | |
| 424-541, - strand, RNAz p=0.685972 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC005871, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 129-311, gnl|bosTau2|chr15 (50270868-50270686) | |
| 129-311, gnl|Hg17|chr10 (82170199-82170381) | |
| 129-311, gnl|Mm7|chr14 (38430193-38430011) | |
| 388-541, gnl|bosTau2|chr15 (50267928-50267774) | |
| 388-541, gnl|canFam2|chr4 (32764591-32764453) | |
| 388-541, gnl|canFam2|chr4 (32764591-32764451) | |
| 388-541, gnl|danRer3|chr13 (16933924-16933785) | |
| 388-541, gnl|danRer3|chr13 (16933923-16933784) | |
| 388-541, gnl|dasNov1|scaffold_26037 (1367-1492) | |
| 388-541, gnl|echTel1|scaffold_192499 (17510-17649) | |
| 388-541, gnl|echTel1|scaffold_192499 (17511-17650) | |
| 388-541, gnl|fr1|chrUn (165354812-165354951) | |
| 388-541, gnl|fr1|chrUn (165354813-165354950) | |
| 388-541, gnl|Hg17|chr10 (82175585-82175739) | |
| 388-541, gnl|hg17|chr12 (77026855-77026994) | |
| 388-541, gnl|hg17|chr8 (74352425-74352563) | |
| 388-541, gnl|loxAfr1|scaffold_184601 (1486-1347) | |
| 388-541, gnl|loxAfr1|scaffold_184601 (1485-1345) | |
| 388-541, gnl|mm7|chr14 (38424815-38424954) | |
| 388-541, gnl|mm7|chr14 (38424816-38424956) | |
| 388-541, gnl|Mm7|chr14 (38424971-38424817) | |
| 388-541, gnl|oryCun1|scaffold_173087 (16991-17130) | |
| 388-541, gnl|oryCun1|scaffold_173087 (16992-17132) | |
| 388-541, gnl|panTro1|chr10 (78576899-78577024) | |
| 388-541, gnl|panTro1|chr7 (76364772-76364910) | |
| 388-541, gnl|rheMac2|chr11 (75129541-75129680) | |
| 388-541, gnl|rheMac2|chr8 (75778969-75779108) | |
| 388-541, gnl|rn3|chr2 (88262510-88262371) | |
| 388-541, gnl|rn3|chr2 (88262509-88262365) | |
| 388-541, gnl|tetNig1|chr2 (948669-948808) | |
| 388-541, gnl|tetNig1|chr2 (948670-948809) | |
| 708-1470, gnl|bosTau2|chr15 (50263472-50262686) | |
| 708-1470, gnl|Hg17|chr10 (82181720-82182786) | |
| 708-1470, gnl|Mm7|chr14 (38420477-38419551) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-311, gnl|bosTau2|chr15 (50270868-50270686) | |
| 129-311, gnl|Hg17|chr10 (82170199-82170381) | |
| 129-311, gnl|Mm7|chr14 (38430193-38430011) | |
| 388-541, gnl|bosTau2|chr15 (50267928-50267774) | |
| 388-541, gnl|canFam2|chr4 (32764591-32764453) | |
| 388-541, gnl|canFam2|chr4 (32764591-32764451) | |
| 388-541, gnl|danRer3|chr13 (16933924-16933785) | |
| 388-541, gnl|danRer3|chr13 (16933923-16933784) | |
| 388-541, gnl|dasNov1|scaffold_26037 (1367-1492) | |
| 388-541, gnl|echTel1|scaffold_192499 (17510-17649) | |
| 388-541, gnl|echTel1|scaffold_192499 (17511-17650) | |
| 388-541, gnl|fr1|chrUn (165354812-165354951) | |
| 388-541, gnl|fr1|chrUn (165354813-165354950) | |
| 388-541, gnl|Hg17|chr10 (82175585-82175739) | |
| 388-541, gnl|hg17|chr12 (77026855-77026994) | |
| 388-541, gnl|hg17|chr8 (74352425-74352563) | |
| 388-541, gnl|loxAfr1|scaffold_184601 (1486-1347) | |
| 388-541, gnl|loxAfr1|scaffold_184601 (1485-1345) | |
| 388-541, gnl|mm7|chr14 (38424815-38424954) | |
| 388-541, gnl|mm7|chr14 (38424816-38424956) | |
| 388-541, gnl|Mm7|chr14 (38424971-38424817) | |
| 388-541, gnl|oryCun1|scaffold_173087 (16991-17130) | |
| 388-541, gnl|oryCun1|scaffold_173087 (16992-17132) | |
| 388-541, gnl|panTro1|chr10 (78576899-78577024) | |
| 388-541, gnl|panTro1|chr7 (76364772-76364910) | |
| 388-541, gnl|rheMac2|chr11 (75129541-75129680) | |
| 388-541, gnl|rheMac2|chr8 (75778969-75779108) | |
| 388-541, gnl|rn3|chr2 (88262510-88262371) | |
| 388-541, gnl|rn3|chr2 (88262509-88262365) | |
| 388-541, gnl|tetNig1|chr2 (948669-948808) | |
| 388-541, gnl|tetNig1|chr2 (948670-948809) | |
| 708-1470, gnl|bosTau2|chr15 (50263472-50262686) | |
| 708-1470, gnl|Hg17|chr10 (82181720-82182786) | |
| 708-1470, gnl|Mm7|chr14 (38420477-38419551) |
| Expressed library(ies): 50 entry(ies) | More info |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
| cbr (8.95828) | |
| cbl (8.15061) | |
| cut (1.52931) | |
| sug (1.27291) | |
| fat (1.17942) | |
| eli (1.0627) | |
| kid (1.03788) | |
| mgp (0.922722) | |
| lin (0.873617) | |
| mga (0.801025) | |
| thg (0.633955) | |
| fco (0.628832) | |
| tes (0.623441) | |
| cmu (0.55918) | |
| ret (0.514933) | |
| cki (0.495704) | |
| csp (0.483559) | |
| cbe (0.478469) | |
| spl (0.429553) | |
| lyg (0.399308) | |
| mgm (0.360685) | |
| sin (0.349895) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| liv (0.292569) | |
| csk (0.281492) | |
| ova (0.258264) | |
| tra (0.246184) | |
| clu (0.239292) | |
| cty (0.20816) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| bla (0.124347) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (8.95828) | |
| cbl (8.15061) | |
| cut (1.52931) | |
| sug (1.27291) | |
| fat (1.17942) | |
| eli (1.0627) | |
| kid (1.03788) | |
| mgp (0.922722) | |
| lin (0.873617) | |
| mga (0.801025) | |
| thg (0.633955) | |
| fco (0.628832) | |
| tes (0.623441) | |
| cmu (0.55918) | |
| ret (0.514933) | |
| cki (0.495704) | |
| csp (0.483559) | |
| cbe (0.478469) | |
| spl (0.429553) | |
| lyg (0.399308) | |
| mgm (0.360685) | |
| sin (0.349895) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| liv (0.292569) | |
| csk (0.281492) | |
| ova (0.258264) | |
| tra (0.246184) | |
| clu (0.239292) | |
| cty (0.20816) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| bla (0.124347) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| ldo (0.0970026) |