Non-Coding RNA Search

Ss1.1-rcbr0_007560.5

Sequence:


               
               TATCCAGGTTTGATAAGAACTTAGTAAGTTTTTCAGTGCAGTTAGTAGGAGACAAAATGA
CATATTATTAACACACAGAAGATACATCCTTCTGATAATTACAGTATTTTATCTGCTAAC
TCAAACACCTCCTTCTCAGTACTTATAGATCTTTAGAAACCAATTTAAAGATAGTAGACA
TGGTTTGGGAACACAGAATAAGTAGAAATTGTGGAAGTCCTAATGAGCTTTTCTTCTACA
GAATACATTTTTCTTAGGGACTAAGAAGAGACTGATGTTTCAACCCTAGATTATACCCTC
CTGTGGACAACTATATAGACATTAATTATACTTTTCCAGCCCTGACTTTTCAGGGTTACT
GGGCCAGCTTTTTCTTATTATTACATCCTCTTTCTTATTGTAACAAATACTTAATAGCAA
TAATATTTTTAGGAATATAACTTCCTTTTTTATTTGTACTCCCTTCAGCCACAAAGTAGT
AGATTCATTTTGATAATTTTTCCTATTTTACTTTTCCATGATTTTTAAATGTCATTTCTT
CATTTGGGTCTGAATTTTCTCATTTATTAAAAAAAAGTTATATTAATACTCTAGGTTTGA
GCTTCTTAAATGGCCATGCTCAATGGAGTGGGGGCATGGTCCCATATCAGGATTCTGTCA
AAATCTGGGAGTTGAGGGAAGAAGTGATAGAATGGTCTGGGGTTTGTTTCTGTGTTGGTG
AAAAAAGTTGAGAAATATTACCTTGCACACAATGAATGAATCAGTGCACAGACACAGGAA
TGTCATGATCTATAGTGTATTGCTGGGGAGAAAAGTTCAGAACAAAAACTTGTACTAGAG
AGCCTAATTTCTGCTGGTTTTGCCCCATTTTTCTCATCTAGAACTGAGTCAACTGCTCCA
GTTTCCCGTTTTCATACTTTAGTTTTCATTACCAAGTTTTCAGAAGTACCCAAGTGACGG
CATCATCTAATTTCCATAGATATGTTGATGTGAACCTAGCCGTACTTCTTCAGAACATAC
TCTGTTCATTTTTGAGCAGCTTTATCTCAGTCTGTTCTATGAACTATTGTTTCAACAGAT
GTTAACAGTGTTCTGCAAATAAAAGTTTCTGTGGATAAATAAATTTTGGGAATAAAAAAA
CATATTATATCCTCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCCAGGTTTGATAAGAACTTAGTAAGTTTTTCAGTGCAGTTAGTAGGAGACAAAATGA
CATATTATTAACACACAGAAGATACATCCTTCTGATAATTACAGTATTTTATCTGCTAAC
TCAAACACCTCCTTCTCAGTACTTATAGATCTTTAGAAACCAATTTAAAGATAGTAGACA
TGGTTTGGGAACACAGAATAAGTAGAAATTGTGGAAGTCCTAATGAGCTTTTCTTCTACA
GAATACATTTTTCTTAGGGACTAAGAAGAGACTGATGTTTCAACCCTAGATTATACCCTC
CTGTGGACAACTATATAGACATTAATTATACTTTTCCAGCCCTGACTTTTCAGGGTTACT
GGGCCAGCTTTTTCTTATTATTACATCCTCTTTCTTATTGTAACAAATACTTAATAGCAA
TAATATTTTTAGGAATATAACTTCCTTTTTTATTTGTACTCCCTTCAGCCACAAAGTAGT
AGATTCATTTTGATAATTTTTCCTATTTTACTTTTCCATGATTTTTAAATGTCATTTCTT
CATTTGGGTCTGAATTTTCTCATTTATTAAAAAAAAGTTATATTAATACTCTAGGTTTGA
GCTTCTTAAATGGCCATGCTCAATGGAGTGGGGGCATGGTCCCATATCAGGATTCTGTCA
AAATCTGGGAGTTGAGGGAAGAAGTGATAGAATGGTCTGGGGTTTGTTTCTGTGTTGGTG
AAAAAAGTTGAGAAATATTACCTTGCACACAATGAATGAATCAGTGCACAGACACAGGAA
TGTCATGATCTATAGTGTATTGCTGGGGAGAAAAGTTCAGAACAAAAACTTGTACTAGAG
AGCCTAATTTCTGCTGGTTTTGCCCCATTTTTCTCATCTAGAACTGAGTCAACTGCTCCA
GTTTCCCGTTTTCATACTTTAGTTTTCATTACCAAGTTTTCAGAAGTACCCAAGTGACGG
CATCATCTAATTTCCATAGATATGTTGATGTGAACCTAGCCGTACTTCTTCAGAACATAC
TCTGTTCATTTTTGAGCAGCTTTATCTCAGTCTGTTCTATGAACTATTGTTTCAACAGAT
GTTAACAGTGTTCTGCAAATAAAAGTTTCTGTGGATAAATAAATTTTGGGAATAAAAAAA
CATATTATATCCTCAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-392, gnl|bosTau2|chr1 (39887176-39886793)
               

               
               1-392, gnl|Hg17|chr3 (123143062-123143441)
               

               
               1-392, gnl|Mm7|chr16 (36459647-36459297)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-392, gnl|bosTau2|chr1 (39887176-39886793)
               

               
               1-392, gnl|Hg17|chr3 (123143062-123143441)
               

               
               1-392, gnl|Mm7|chr16 (36459647-36459297)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cbr (3.19939)
               

               
               kid (0.259471)
               

               
               fli (0.202881)
               

               
               fco (0.157208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (3.19939)
               

               
               kid (0.259471)
               

               
               fli (0.202881)
               

               
               fco (0.157208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	1-392, gnl\|bosTau2\|chr1 (39887176-39886793)
	1-392, gnl\|Hg17\|chr3 (123143062-123143441)
	1-392, gnl\|Mm7\|chr16 (36459647-36459297)

	cbr (3.19939)
	kid (0.259471)
	fli (0.202881)
	fco (0.157208)
	ute (0.132784)
	ova (0.129132)
	eru (0.120048)
	spc (0.113366)
	nbm (0.0993246)