Ss1.1-rcbr0_007660.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCCGCAGCCCGGAAGGAGGTGATAAGGAACAAGATTCGGGCGATCGGCAAGATGGCCA GAGTGTTCTCGGTTCTCAGAGAAGAGAGTGAGAGTGTGCTGACGCTGAAAGGCCTGACGC CCACAGGCATGCTCCCCAGCGGAGTGCTTTCTGGAGGGAAACAAACCCTGCAAAGCGCTA CTGTTGAGGCTATTGAGGCTGATGAAGCTATCAAAGGATTTTCACCACAACATAAGATCA CTAGCTTCGAGGAGGCCAAGGGCTTAGACCGAATTAACGAGAGGATGCCACCTCGCAGAG ATGCCATGCCCTCCGACGCCAACCTTAACTCCATCAACAAGGCTCTCGCCTCAGAGACTA ACGGCACAGACAGCAATGGCAGTAATAGCAGCAATATCCAGTGACCACTTCCTGTTCACT TTTTTTTTCTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTGTTGAGCTGCAGGGCATGAT GGGGATGGCTGCATATCAGCAGTTGGATGTTCTTGCCTCTGATGGTAGCTTACTTGCTCT GGGGCCAGGAGTTGGATTCAGTTTACACTATCATTAAAAAAGAGGGAGAGAGATACTAAA CTATATTTTGGTGGGGGTGGTGATTAAACACCTCTTTGGGGTATGCCTTTTAAAAAATGC TTATAGGAAAAAAAAAATTTTTAAAGAAAGCTCATGCTAGTCTATACTGCAATGTTAGGG GAATGAACATGTTTTCCTACTGCATTGGGGACTTCTAGATAGGTTAATGAAAGGTCTTTT ATTATGTTACTGGACACGAAAACTTTGTCTAATTTCTTACTCTATTGTACGTTTACAGTC GCAGCACTAAAAATGGATGACATCAAACATTTTTAACAAAATGATGTACAAACTAAATAA GGACTATTTATTGATAATGTTTTGCTACTCTTGTCAGACAATGGCTATAAAATGAATTAG GCAGTCTTAAAAAAAAAAAAAAAAGAAAAAGAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCCGCAGCCCGGAAGGAGGTGATAAGGAACAAGATTCGGGCGATCGGCAAGATGGCCA GAGTGTTCTCGGTTCTCAGAGAAGAGAGTGAGAGTGTGCTGACGCTGAAAGGCCTGACGC CCACAGGCATGCTCCCCAGCGGAGTGCTTTCTGGAGGGAAACAAACCCTGCAAAGCGCTA CTGTTGAGGCTATTGAGGCTGATGAAGCTATCAAAGGATTTTCACCACAACATAAGATCA CTAGCTTCGAGGAGGCCAAGGGCTTAGACCGAATTAACGAGAGGATGCCACCTCGCAGAG ATGCCATGCCCTCCGACGCCAACCTTAACTCCATCAACAAGGCTCTCGCCTCAGAGACTA ACGGCACAGACAGCAATGGCAGTAATAGCAGCAATATCCAGTGACCACTTCCTGTTCACT TTTTTTTTCTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTGTTGAGCTGCAGGGCATGAT GGGGATGGCTGCATATCAGCAGTTGGATGTTCTTGCCTCTGATGGTAGCTTACTTGCTCT GGGGCCAGGAGTTGGATTCAGTTTACACTATCATTAAAAAAGAGGGAGAGAGATACTAAA CTATATTTTGGTGGGGGTGGTGATTAAACACCTCTTTGGGGTATGCCTTTTAAAAAATGC TTATAGGAAAAAAAAAATTTTTAAAGAAAGCTCATGCTAGTCTATACTGCAATGTTAGGG GAATGAACATGTTTTCCTACTGCATTGGGGACTTCTAGATAGGTTAATGAAAGGTCTTTT ATTATGTTACTGGACACGAAAACTTTGTCTAATTTCTTACTCTATTGTACGTTTACAGTC GCAGCACTAAAAATGGATGACATCAAACATTTTTAACAAAATGATGTACAAACTAAATAA GGACTATTTATTGATAATGTTTTGCTACTCTTGTCAGACAATGGCTATAAAATGAATTAG GCAGTCTTAAAAAAAAAAAAAAAAGAAAAAGAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 446-581, + strand, RNAz p=0.861442 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 446-581, + strand, RNAz p=0.861442 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 77-180, gnl|bosTau2|chr15 (41490733-41490630) | |
| 77-180, gnl|canFam2|chr32 (25619740-25619847) | |
| 77-180, gnl|danRer3|chr5 (21737866-21737762) | |
| 77-180, gnl|dasNov1|scaffold_197251 (1523-1416) | |
| 77-180, gnl|echTel1|scaffold_311897 (10404-10498) | |
| 77-180, gnl|fr1|chrUn (215889960-215890064) | |
| 77-180, gnl|galGal2|chr4 (60779073-60779180) | |
| 77-180, gnl|hg17|chr4 (102310595-102310702) | |
| 77-180, gnl|Hg17|chr4 (102310702-102310599) | |
| 77-180, gnl|mm7|chr3 (136722887-136722780) | |
| 77-180, gnl|Mm7|chr3 (136722778-136722881) | |
| 77-180, gnl|monDom2|scaffold_37 (11348873-11348766) | |
| 77-180, gnl|oryCun1|scaffold_137142 (3526-3432) | |
| 77-180, gnl|panTro1|chr3 (118694684-118694791) | |
| 77-180, gnl|rheMac2|chr5 (93994519-93994626) | |
| 77-180, gnl|rn3|chr2 (234389080-234388973) | |
| 77-180, gnl|tetNig1|chrUn_random (43855879-43855772) | |
| 77-180, gnl|xenTro1|scaffold_326 (977232-977125) | |
| 206-438, gnl|bosTau2|chr15 (41484357-41484125) | |
| 206-438, gnl|Hg17|chr4 (102304398-102304166) | |
| 206-438, gnl|Mm7|chr3 (136729286-136729512) | |
| 446-1008, gnl|bosTau2|chr15 (41484142-41483578) | |
| 446-1008, gnl|Hg17|chr4 (102304183-102303623) | |
| 446-1008, gnl|Mm7|chr3 (136729500-136730110) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 77-180, gnl|bosTau2|chr15 (41490733-41490630) | |
| 77-180, gnl|canFam2|chr32 (25619740-25619847) | |
| 77-180, gnl|danRer3|chr5 (21737866-21737762) | |
| 77-180, gnl|dasNov1|scaffold_197251 (1523-1416) | |
| 77-180, gnl|echTel1|scaffold_311897 (10404-10498) | |
| 77-180, gnl|fr1|chrUn (215889960-215890064) | |
| 77-180, gnl|galGal2|chr4 (60779073-60779180) | |
| 77-180, gnl|hg17|chr4 (102310595-102310702) | |
| 77-180, gnl|Hg17|chr4 (102310702-102310599) | |
| 77-180, gnl|mm7|chr3 (136722887-136722780) | |
| 77-180, gnl|Mm7|chr3 (136722778-136722881) | |
| 77-180, gnl|monDom2|scaffold_37 (11348873-11348766) | |
| 77-180, gnl|oryCun1|scaffold_137142 (3526-3432) | |
| 77-180, gnl|panTro1|chr3 (118694684-118694791) | |
| 77-180, gnl|rheMac2|chr5 (93994519-93994626) | |
| 77-180, gnl|rn3|chr2 (234389080-234388973) | |
| 77-180, gnl|tetNig1|chrUn_random (43855879-43855772) | |
| 77-180, gnl|xenTro1|scaffold_326 (977232-977125) | |
| 206-438, gnl|bosTau2|chr15 (41484357-41484125) | |
| 206-438, gnl|Hg17|chr4 (102304398-102304166) | |
| 206-438, gnl|Mm7|chr3 (136729286-136729512) | |
| 446-1008, gnl|bosTau2|chr15 (41484142-41483578) | |
| 446-1008, gnl|Hg17|chr4 (102304183-102303623) | |
| 446-1008, gnl|Mm7|chr3 (136729500-136730110) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cbr (4.22319) | |
| fco (0.471624) | |
| amn (0.417711) | |
| elu (0.385356) | |
| vin (0.332557) | |
| sme (0.305437) | |
| fce (0.271592) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| col (0.195008) | |
| sag (0.182715) | |
| bfe (0.149858) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| spc (0.113366) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (4.22319) | |
| fco (0.471624) | |
| amn (0.417711) | |
| elu (0.385356) | |
| vin (0.332557) | |
| sme (0.305437) | |
| fce (0.271592) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| col (0.195008) | |
| sag (0.182715) | |
| bfe (0.149858) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| spc (0.113366) |