Non-Coding RNA Search

Ss1.1-rcbr0_008107.5

Sequence:


               
               TGAGGATGGGCTCTAACAAGCACTCAAAGTGATTCTAACGCACACTAGAGTTTGAGAACC
ATCACCTTAGGGGCAAGCTGGGAAATGCTTATAGGGTATCAAGGATATTTTAAGTACCAT
CCTCTGCCTTAGCACTAACATGTTTTTCCATTTCCTCCGGACTCTCCCTCCACTCCCATT
AAAACAACAACAGCATCACTCATCTCAAAATCTAGGTTCACCTTCCTCTACATACCCCTG
AAACCTGTCCTACGTGGGCCTGGACAGGACTTGTCTCATATTCCCTTGCAAACTGGTCAC
TCCATGTCCTTTGTTACAGGAAGGACCAGCTGCCCTGTTCTCCCACCCCTTACACACCTT
TCAGGCAGGGAGATGAGCCTCCAGCCCCCACAGTGGAGGCTGCAGCCTCCTGACATAGTA
TCTATTGAAAAGAAAGCTGTGCGTCTATGGCTATATCTCTGTTCATCTGTATATCTTTGA
CATGTGGCAACACCTCTTCATCTCATCAAGGATCTTGACTCTGGGTCTGGGTCTCCCCAG
CCCCCAGCGGTGGGCTTTGACGGGTGGGAGGATGCAGTGCTACAGGCTGTTTTGTTACAA
AACTGTCTGCTCCCTTTCCCCACCATCCACTTCAGCACGATCCCTGTGAGCAGGCTCTCA
CAGTCTCCCGGGACAGGGCTGAGGCAGAAGCTTCGCTCTATTCTCCCTGGCCGTCCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGATGGGCTCTAACAAGCACTCAAAGTGATTCTAACGCACACTAGAGTTTGAGAACC
ATCACCTTAGGGGCAAGCTGGGAAATGCTTATAGGGTATCAAGGATATTTTAAGTACCAT
CCTCTGCCTTAGCACTAACATGTTTTTCCATTTCCTCCGGACTCTCCCTCCACTCCCATT
AAAACAACAACAGCATCACTCATCTCAAAATCTAGGTTCACCTTCCTCTACATACCCCTG
AAACCTGTCCTACGTGGGCCTGGACAGGACTTGTCTCATATTCCCTTGCAAACTGGTCAC
TCCATGTCCTTTGTTACAGGAAGGACCAGCTGCCCTGTTCTCCCACCCCTTACACACCTT
TCAGGCAGGGAGATGAGCCTCCAGCCCCCACAGTGGAGGCTGCAGCCTCCTGACATAGTA
TCTATTGAAAAGAAAGCTGTGCGTCTATGGCTATATCTCTGTTCATCTGTATATCTTTGA
CATGTGGCAACACCTCTTCATCTCATCAAGGATCTTGACTCTGGGTCTGGGTCTCCCCAG
CCCCCAGCGGTGGGCTTTGACGGGTGGGAGGATGCAGTGCTACAGGCTGTTTTGTTACAA
AACTGTCTGCTCCCTTTCCCCACCATCCACTTCAGCACGATCCCTGTGAGCAGGCTCTCA
CAGTCTCCCGGGACAGGGCTGAGGCAGAAGCTTCGCTCTATTCTCCCTGGCCGTCCCTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|12834411|dbj|BAB22899.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|12834411|dbj|BAB22899.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               348-451, - strand, RNAz p=0.695134
               

               
               492-604, - strand, RNAz p=0.768371
               

               
               606-720, - strand, RNAz p=0.825679

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               348-451, - strand, RNAz p=0.695134
               

               
               492-604, - strand, RNAz p=0.768371
               

               
               606-720, - strand, RNAz p=0.825679

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-720, gnl|bosTau2|chr5 (18944351-18945063)
               

               
               1-720, gnl|Hg17|chr12 (52192973-52192231)
               

               
               1-720, gnl|Mm7|chr15 (102515798-102514915)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr5 (18944351-18945063)
               

               
               1-720, gnl|Hg17|chr12 (52192973-52192231)
               

               
               1-720, gnl|Mm7|chr15 (102515798-102514915)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               cbr (1.0238)
               

               
               eye (0.170503)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.0238)
               

               
               eye (0.170503)
               

               
               jca (0.11396)

	348-451, - strand, RNAz p=0.695134
	492-604, - strand, RNAz p=0.768371
	606-720, - strand, RNAz p=0.825679

	1-720, gnl\|bosTau2\|chr5 (18944351-18945063)
	1-720, gnl\|Hg17\|chr12 (52192973-52192231)
	1-720, gnl\|Mm7\|chr15 (102515798-102514915)