Ss1.1-rcbr0_008307.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTCGAAGAACCACGGCCTCTTGCCGCAGCCCGAGTTCCAGCAGCTGCTGCGCAAGGCC AAGCTCTTCATAGGGTTGGGCTTCCCCTATGAGGGCCCTGCACCCCTGGAGGCCATCGCC AATGGCTGTGTCTTCCTGCAGTCCCGCTTCAGCCCGCCCCACAGCTCCCTCAACCACGAG TTCTTCAGAGGCAAACCCACCTCCAGGGAGGTGTTCTCCCAGCACCCCTACGCGGAGAAC TTCATTGGCAAGCCCCACGTGTGGACCGTCGACTACAACAACTCAGAGGAGTTTGAAGCA GCCATCAAGGCCATCATGGGAACCCAGGTAGACCCTTACCTGCCCTACGAGTACACGTGC GAGGGGATGCTGGAGCGCATCCACGCCTACATCCAGCACCAGGACTTCTGTGCAGCCCCA GGCCTTGCCCTGCCAGGGGCGCAAGCCCCACGGAGCCCCTTCGTCCTGGCCCCCAATGCC ACCCACCTTCAGTGGGCCCGCAACGCCAGCCTGGCCCCGGGGGCCTGGCCCCCAGCGCGC TCCCTCCGGGCCTGGCTGGCTGCCGCTGGGAGGGCCTGCACGGACGCCTGCCTGGACCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTCGAAGAACCACGGCCTCTTGCCGCAGCCCGAGTTCCAGCAGCTGCTGCGCAAGGCC AAGCTCTTCATAGGGTTGGGCTTCCCCTATGAGGGCCCTGCACCCCTGGAGGCCATCGCC AATGGCTGTGTCTTCCTGCAGTCCCGCTTCAGCCCGCCCCACAGCTCCCTCAACCACGAG TTCTTCAGAGGCAAACCCACCTCCAGGGAGGTGTTCTCCCAGCACCCCTACGCGGAGAAC TTCATTGGCAAGCCCCACGTGTGGACCGTCGACTACAACAACTCAGAGGAGTTTGAAGCA GCCATCAAGGCCATCATGGGAACCCAGGTAGACCCTTACCTGCCCTACGAGTACACGTGC GAGGGGATGCTGGAGCGCATCCACGCCTACATCCAGCACCAGGACTTCTGTGCAGCCCCA GGCCTTGCCCTGCCAGGGGCGCAAGCCCCACGGAGCCCCTTCGTCCTGGCCCCCAATGCC ACCCACCTTCAGTGGGCCCGCAACGCCAGCCTGGCCCCGGGGGCCTGGCCCCCAGCGCGC TCCCTCCGGGCCTGGCTGGCTGCCGCTGGGAGGGCCTGCACGGACGCCTGCCTGGACCAC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 62-177, + strand, RNAz p=0.536849 | |
| 95-213, - strand, RNAz p=0.551612 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 62-177, + strand, RNAz p=0.536849 | |
| 95-213, - strand, RNAz p=0.551612 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 62-213, gnl|bosTau2|chr19 (48871920-48871769) | |
| 62-213, gnl|canFam2|chr9 (6889515-6889346) | |
| 62-213, gnl|danRer3|chrNA (75436700-75436542) | |
| 62-213, gnl|dasNov1|scaffold_303603 (217-52) | |
| 62-213, gnl|echTel1|scaffold_316353 (42053-41897) | |
| 62-213, gnl|fr1|chrUn (153594800-153594631) | |
| 62-213, gnl|galGal2|chr18 (4001934-4001777) | |
| 62-213, gnl|hg17|chr17 (72448074-72448243) | |
| 62-213, gnl|Hg17|chr17 (72448077-72448228) | |
| 62-213, gnl|loxAfr1|scaffold_72658 (2151-1995) | |
| 62-213, gnl|mm7|chr11 (117087105-117087270) | |
| 62-213, gnl|Mm7|chr11 (117087105-117087256) | |
| 62-213, gnl|monDom2|scaffold_18 (4455207-4455364) | |
| 62-213, gnl|oryCun1|scaffold_215414 (579051-579208) | |
| 62-213, gnl|panTro1|chr19 (75825796-75825965) | |
| 62-213, gnl|rheMac2|chr16 (72279947-72280116) | |
| 62-213, gnl|rn3|chr10 (107095134-107095300) | |
| 62-213, gnl|tetNig1|chrUn_random (39681498-39681333) | |
| 62-213, gnl|xenTro1|scaffold_135 (1550450-1550281) | |
| 401-600, gnl|bosTau2|chr19 (48865409-48865210) | |
| 401-600, gnl|canFam2|chr9 (6882601-6882452) | |
| 401-600, gnl|danRer3|chrNA (75421055-75420909) | |
| 401-600, gnl|fr1|chrUn (153590721-153590581) | |
| 401-600, gnl|galGal2|chr18 (3996660-3996511) | |
| 401-600, gnl|hg17|chr17 (72455499-72455630) | |
| 401-600, gnl|Hg17|chr17 (72455505-72455704) | |
| 401-600, gnl|mm7|chr11 (117093912-117094043) | |
| 401-600, gnl|Mm7|chr11 (117093918-117094117) | |
| 401-600, gnl|monDom2|scaffold_18 (4467630-4467767) | |
| 401-600, gnl|panTro1|chr19 (75833293-75833424) | |
| 401-600, gnl|rheMac2|chr16 (72287297-72287428) | |
| 401-600, gnl|rn3|chr10 (107101785-107101916) | |
| 401-600, gnl|tetNig1|chrUn_random (39678040-39677898) | |
| 401-600, gnl|xenTro1|scaffold_135 (1545596-1545461) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-213, gnl|bosTau2|chr19 (48871920-48871769) | |
| 62-213, gnl|canFam2|chr9 (6889515-6889346) | |
| 62-213, gnl|danRer3|chrNA (75436700-75436542) | |
| 62-213, gnl|dasNov1|scaffold_303603 (217-52) | |
| 62-213, gnl|echTel1|scaffold_316353 (42053-41897) | |
| 62-213, gnl|fr1|chrUn (153594800-153594631) | |
| 62-213, gnl|galGal2|chr18 (4001934-4001777) | |
| 62-213, gnl|hg17|chr17 (72448074-72448243) | |
| 62-213, gnl|Hg17|chr17 (72448077-72448228) | |
| 62-213, gnl|loxAfr1|scaffold_72658 (2151-1995) | |
| 62-213, gnl|mm7|chr11 (117087105-117087270) | |
| 62-213, gnl|Mm7|chr11 (117087105-117087256) | |
| 62-213, gnl|monDom2|scaffold_18 (4455207-4455364) | |
| 62-213, gnl|oryCun1|scaffold_215414 (579051-579208) | |
| 62-213, gnl|panTro1|chr19 (75825796-75825965) | |
| 62-213, gnl|rheMac2|chr16 (72279947-72280116) | |
| 62-213, gnl|rn3|chr10 (107095134-107095300) | |
| 62-213, gnl|tetNig1|chrUn_random (39681498-39681333) | |
| 62-213, gnl|xenTro1|scaffold_135 (1550450-1550281) | |
| 401-600, gnl|bosTau2|chr19 (48865409-48865210) | |
| 401-600, gnl|canFam2|chr9 (6882601-6882452) | |
| 401-600, gnl|danRer3|chrNA (75421055-75420909) | |
| 401-600, gnl|fr1|chrUn (153590721-153590581) | |
| 401-600, gnl|galGal2|chr18 (3996660-3996511) | |
| 401-600, gnl|hg17|chr17 (72455499-72455630) | |
| 401-600, gnl|Hg17|chr17 (72455505-72455704) | |
| 401-600, gnl|mm7|chr11 (117093912-117094043) | |
| 401-600, gnl|Mm7|chr11 (117093918-117094117) | |
| 401-600, gnl|monDom2|scaffold_18 (4467630-4467767) | |
| 401-600, gnl|panTro1|chr19 (75833293-75833424) | |
| 401-600, gnl|rheMac2|chr16 (72287297-72287428) | |
| 401-600, gnl|rn3|chr10 (107101785-107101916) | |
| 401-600, gnl|tetNig1|chrUn_random (39678040-39677898) | |
| 401-600, gnl|xenTro1|scaffold_135 (1545596-1545461) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (2.43153) | |
| fty (0.17584) |