Non-Coding RNA Search

Ss1.1-rcbr0_008392.5

Sequence:


               
               CGGGCTGCAGGAAATCGAATTCTATACCTTCGGGCCACATTTTAGAACACTTCAACAATT
TTCCAAACTTTCCCATTACCGGGAAGTAGGAAGAGAGCCTACTAGGTGAAGAGGACTGGT
TTTCTATTTCAGGTTTTAAAAGCCAGGTCTGCTAAACAAGAAAAAAACTCAAAGAACCCC
AGGTTCCTAGTTCATTATTCTGTATTCTTAACTTTATTCACTTTTTCAAGTTACCTATTT
GGTGGCATAAGCTGATGGTTAATTACAAATGCCTGTTTAATAAAGAACTCTGACCAAGAC
TGTAAATGCCAGTTACATTATTTTCAGTATGGTGGGTTATATTTAAATTTTCCTTATAAT
AAAGCACACTTTTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTGCAGGAAATCGAATTCTATACCTTCGGGCCACATTTTAGAACACTTCAACAATT
TTCCAAACTTTCCCATTACCGGGAAGTAGGAAGAGAGCCTACTAGGTGAAGAGGACTGGT
TTTCTATTTCAGGTTTTAAAAGCCAGGTCTGCTAAACAAGAAAAAAACTCAAAGAACCCC
AGGTTCCTAGTTCATTATTCTGTATTCTTAACTTTATTCACTTTTTCAAGTTACCTATTT
GGTGGCATAAGCTGATGGTTAATTACAAATGCCTGTTTAATAAAGAACTCTGACCAAGAC
TGTAAATGCCAGTTACATTATTTTCAGTATGGTGGGTTATATTTAAATTTTCCTTATAAT
AAAGCACACTTTTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               23-382, gnl|bosTau2|chr4 (20473973-20474319)
               

               
               23-382, gnl|canFam2|chr18 (16360683-16361107)
               

               
               23-382, gnl|dasNov1|scaffold_150258 (3789-4229)
               

               
               23-382, gnl|echTel1|scaffold_199472 (1495-1914)
               

               
               23-382, gnl|galGal2|chr1 (9150530-9150921)
               

               
               23-382, gnl|hg17|chr6 (11101248-11101665)
               

               
               23-382, gnl|Hg17|chr7 (106395535-106395899)
               

               
               23-382, gnl|mm7|chr12 (29798042-29798429)
               

               
               23-382, gnl|Mm7|chr12 (29798375-29798034)
               

               
               23-382, gnl|monDom2|scaffold_22 (45573562-45573998)
               

               
               23-382, gnl|panTro1|chr5 (11369079-11369500)
               

               
               23-382, gnl|rheMac2|chr4 (10957630-10958059)
               

               
               23-382, gnl|rn3|chr6 (50238112-50238535)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-382, gnl|bosTau2|chr4 (20473973-20474319)
               

               
               23-382, gnl|canFam2|chr18 (16360683-16361107)
               

               
               23-382, gnl|dasNov1|scaffold_150258 (3789-4229)
               

               
               23-382, gnl|echTel1|scaffold_199472 (1495-1914)
               

               
               23-382, gnl|galGal2|chr1 (9150530-9150921)
               

               
               23-382, gnl|hg17|chr6 (11101248-11101665)
               

               
               23-382, gnl|Hg17|chr7 (106395535-106395899)
               

               
               23-382, gnl|mm7|chr12 (29798042-29798429)
               

               
               23-382, gnl|Mm7|chr12 (29798375-29798034)
               

               
               23-382, gnl|monDom2|scaffold_22 (45573562-45573998)
               

               
               23-382, gnl|panTro1|chr5 (11369079-11369500)
               

               
               23-382, gnl|rheMac2|chr4 (10957630-10958059)
               

               
               23-382, gnl|rn3|chr6 (50238112-50238535)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbr (0.511902)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.511902)

	23-382, gnl\|bosTau2\|chr4 (20473973-20474319)
	23-382, gnl\|canFam2\|chr18 (16360683-16361107)
	23-382, gnl\|dasNov1\|scaffold_150258 (3789-4229)
	23-382, gnl\|echTel1\|scaffold_199472 (1495-1914)
	23-382, gnl\|galGal2\|chr1 (9150530-9150921)
	23-382, gnl\|hg17\|chr6 (11101248-11101665)
	23-382, gnl\|Hg17\|chr7 (106395535-106395899)
	23-382, gnl\|mm7\|chr12 (29798042-29798429)
	23-382, gnl\|Mm7\|chr12 (29798375-29798034)
	23-382, gnl\|monDom2\|scaffold_22 (45573562-45573998)
	23-382, gnl\|panTro1\|chr5 (11369079-11369500)
	23-382, gnl\|rheMac2\|chr4 (10957630-10958059)
	23-382, gnl\|rn3\|chr6 (50238112-50238535)