Non-Coding RNA Search

Ss1.1-rcbr0_008716.5

Sequence:


               
               TCATTTTTTTAAAATCTTTGTATCTTGTTATTTCTGTGTGTCTGTATTGGGGAAATGCTT
AAATTGACTCAGAGGAATAGATCATGATGCCCCATCAGCAAAACCACCTCCATCCTTCCA
AGGACCAGGCCCACTCACCTTCACCAGGATGCTCAGCTGGGCAGCCCCACGTTCATCCAG
GGGGCCCAGGTTCTGACTGACCAGTGAGCAAAAGCTGTGACAGAGGTCTAAGATTTCATT
CAGGCAGTGAAACACCTATACAGGAAACAGGTGACATTAGGAGGAAAAAGGAATAGATAG
ACCTGTGAAATTATAGATTTGGGAAAATAAGAGCTACCCTCTTCCCCTCCTCTACATCTG
ACCTCCGCAAAAAAAAGTGCAAGTTCTGCCAGCCCCTCAAAATGCAACGTGTGTAAAACT
TCCCTTTTGGGCAAAGACACTGCCGTCCTCTTGGTCAGCCTGCACGAAACCTCCGCTTGA
GGCACATTAAACTAGTCCTTGTCTCTCAAACCCACCGACTGTGCTCCCACCTTGAGCTCT
GCTTTCTGTGTCGTCCCCTGCGCCTGGAACACTCTCCTCAATACCAGTTGGAGTCCCACT
CTCGCTGGTGCACCCCCTGCCCCACCACAGCCCCTAGAGACCCTTTGCTTCCCTCCCCTC
TGTAGTATCTGTACTGTTGAGGCCGCCTGTGTTGTTACTGATCTGTGATGTATGTATGTC
CTGTTTCTCCAACTAGATTGTGAGCTCCTTAAGGGCAGAGCCATGACTTATACCTCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTTTTTTAAAATCTTTGTATCTTGTTATTTCTGTGTGTCTGTATTGGGGAAATGCTT
AAATTGACTCAGAGGAATAGATCATGATGCCCCATCAGCAAAACCACCTCCATCCTTCCA
AGGACCAGGCCCACTCACCTTCACCAGGATGCTCAGCTGGGCAGCCCCACGTTCATCCAG
GGGGCCCAGGTTCTGACTGACCAGTGAGCAAAAGCTGTGACAGAGGTCTAAGATTTCATT
CAGGCAGTGAAACACCTATACAGGAAACAGGTGACATTAGGAGGAAAAAGGAATAGATAG
ACCTGTGAAATTATAGATTTGGGAAAATAAGAGCTACCCTCTTCCCCTCCTCTACATCTG
ACCTCCGCAAAAAAAAGTGCAAGTTCTGCCAGCCCCTCAAAATGCAACGTGTGTAAAACT
TCCCTTTTGGGCAAAGACACTGCCGTCCTCTTGGTCAGCCTGCACGAAACCTCCGCTTGA
GGCACATTAAACTAGTCCTTGTCTCTCAAACCCACCGACTGTGCTCCCACCTTGAGCTCT
GCTTTCTGTGTCGTCCCCTGCGCCTGGAACACTCTCCTCAATACCAGTTGGAGTCCCACT
CTCGCTGGTGCACCCCCTGCCCCACCACAGCCCCTAGAGACCCTTTGCTTCCCTCCCCTC
TGTAGTATCTGTACTGTTGAGGCCGCCTGTGTTGTTACTGATCTGTGATGTATGTATGTC
CTGTTTCTCCAACTAGATTGTGAGCTCCTTAAGGGCAGAGCCATGACTTATACCTCTTTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               18-346, gnl|bosTau2|chr21 (34271953-34271637)
               

               
               18-346, gnl|Hg17|chr15 (41483420-41483061)
               

               
               18-346, gnl|Mm7|chr2 (120936498-120936174)
               


               
               459-780, gnl|bosTau2|chr21 (34271619-34271306)
               

               
               459-780, gnl|Hg17|chr15 (41482948-41482605)
               

               
               459-780, gnl|Mm7|chr2 (120936061-120935739)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-346, gnl|bosTau2|chr21 (34271953-34271637)
               

               
               18-346, gnl|Hg17|chr15 (41483420-41483061)
               

               
               18-346, gnl|Mm7|chr2 (120936498-120936174)
               


               
               459-780, gnl|bosTau2|chr21 (34271619-34271306)
               

               
               459-780, gnl|Hg17|chr15 (41482948-41482605)
               

               
               459-780, gnl|Mm7|chr2 (120936061-120935739)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (2.43153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.43153)

	18-346, gnl\|bosTau2\|chr21 (34271953-34271637)
	18-346, gnl\|Hg17\|chr15 (41483420-41483061)
	18-346, gnl\|Mm7\|chr2 (120936498-120936174)

	459-780, gnl\|bosTau2\|chr21 (34271619-34271306)
	459-780, gnl\|Hg17\|chr15 (41482948-41482605)
	459-780, gnl\|Mm7\|chr2 (120936061-120935739)