Non-Coding RNA Search

Ss1.1-rcbr0_010346.5

Sequence:


               
               GGAGGTGGCTTGGTGTCTGCCATGGTGGGCGTGCCACCCTCTGGAGGGCAGCCTGGAGGT
GGAGGGCTCTGAGCCCCGCCCCCACGCCTTTGAAGGGACAGTGGGCCGGAGGGTGGCATC
CTGTGAATGACTTCCTCCAAGACCACTGGCTCCATGTCCCCAGTGGTGGCCTCTTCCTCC
CTCCCTGCAGGATGGGGGTCCTGAGCTGAGGGGCTCCCTCCGCCCCAGGAAGCCCTGTTT
TATTGAGTTCTGAAGGTTGGAACCACAGCCACGATTCTGGCCACCTCACAGATCTGGGAC
CTTAGGGCTAACCAGTTCTCTTTGTAAGGACTTGTGCCTCTTGGGGGACGTCCGCCTGTT
CCCAGGCTTGGGCCTGTGGCATCTCTGGAGTGTGCGGGGTCTGGGAGGGGGGTCCTGAGC
CTCTCACCCCTCCCACGCCCACTGCAGCAGCCACCTGTCTGCCCTGCCTGTGTGTCTGCT
GTGCGGAGCCCAGTCACTGCCTGTTCCCCTCATTATGTCACTGTCCCGAGTTCCCAGCCT
CCCCCCCCACTTCAGTAATGGACGTGGTTAGATGGGGAGGCATCTCCGCATGGAGGGGGA
AAGTCAAGGAGGGCGAGGTTTGGACACTGGGTGGGGGCCCTCAGTCTTCTGTTCGAAGCA
TCCCGCTGGCATGTCCTCACAGTGACCCTTGATGACCTTACTCGGTTCCCTGCCCCCACC
CCAGACGTGAGCCAGGGTGGGGTTCGCAATGACTCGTTGACTTGGTGAGCCTTTCCTCCC
AGAAGCCTGGCCCCCCTCCCGTGCTGAGCTAGCAGCGGGTCGGCTGCCCTGGATGCCAGA
GATGGCGCTGGGACAGGTAGGCAAGGCCCTCAGGGCCAGGCCGGGCTTCCTCCATCCCCA
CTTCTGCCTCAGCTTGTGACTGCCAGCCTCTGAGAGCCCGGCCGCTGCTCTACCCCCCAT
GTATATAGTCAGCCCTCCACACCCCAAAAAGGGAAACGTGCCCCCTCGGAAATGGTTCTT
TCCCATCCCAGCTGGAAGTGATGCTGTCTGTCCTGCTGGAGCAGCTGAACATTCACATAG
ATGTCACCCCTCCCTCCCGGTCTGCACCCTGTCGCGTCGTAGTCGGATTTGTCTGTCTGT
GCTTGGATTCACCAGAGTGACTATGGTAGTGAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGTGGCTTGGTGTCTGCCATGGTGGGCGTGCCACCCTCTGGAGGGCAGCCTGGAGGT
GGAGGGCTCTGAGCCCCGCCCCCACGCCTTTGAAGGGACAGTGGGCCGGAGGGTGGCATC
CTGTGAATGACTTCCTCCAAGACCACTGGCTCCATGTCCCCAGTGGTGGCCTCTTCCTCC
CTCCCTGCAGGATGGGGGTCCTGAGCTGAGGGGCTCCCTCCGCCCCAGGAAGCCCTGTTT
TATTGAGTTCTGAAGGTTGGAACCACAGCCACGATTCTGGCCACCTCACAGATCTGGGAC
CTTAGGGCTAACCAGTTCTCTTTGTAAGGACTTGTGCCTCTTGGGGGACGTCCGCCTGTT
CCCAGGCTTGGGCCTGTGGCATCTCTGGAGTGTGCGGGGTCTGGGAGGGGGGTCCTGAGC
CTCTCACCCCTCCCACGCCCACTGCAGCAGCCACCTGTCTGCCCTGCCTGTGTGTCTGCT
GTGCGGAGCCCAGTCACTGCCTGTTCCCCTCATTATGTCACTGTCCCGAGTTCCCAGCCT
CCCCCCCCACTTCAGTAATGGACGTGGTTAGATGGGGAGGCATCTCCGCATGGAGGGGGA
AAGTCAAGGAGGGCGAGGTTTGGACACTGGGTGGGGGCCCTCAGTCTTCTGTTCGAAGCA
TCCCGCTGGCATGTCCTCACAGTGACCCTTGATGACCTTACTCGGTTCCCTGCCCCCACC
CCAGACGTGAGCCAGGGTGGGGTTCGCAATGACTCGTTGACTTGGTGAGCCTTTCCTCCC
AGAAGCCTGGCCCCCCTCCCGTGCTGAGCTAGCAGCGGGTCGGCTGCCCTGGATGCCAGA
GATGGCGCTGGGACAGGTAGGCAAGGCCCTCAGGGCCAGGCCGGGCTTCCTCCATCCCCA
CTTCTGCCTCAGCTTGTGACTGCCAGCCTCTGAGAGCCCGGCCGCTGCTCTACCCCCCAT
GTATATAGTCAGCCCTCCACACCCCAAAAAGGGAAACGTGCCCCCTCGGAAATGGTTCTT
TCCCATCCCAGCTGGAAGTGATGCTGTCTGTCCTGCTGGAGCAGCTGAACATTCACATAG
ATGTCACCCCTCCCTCCCGGTCTGCACCCTGTCGCGTCGTAGTCGGATTTGTCTGTCTGT
GCTTGGATTCACCAGAGTGACTATGGTAGTGAAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               782-897, + strand, RNAz p=0.933516

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               782-897, + strand, RNAz p=0.933516

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK055986, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK055986, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               159-1176, gnl|bosTau2|chr19 (41943850-41942830)
               

               
               159-1176, gnl|Hg17|chr17 (41458216-41459300)
               

               
               159-1176, gnl|Mm7|chr11 (104438069-104439116)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-1176, gnl|bosTau2|chr19 (41943850-41942830)
               

               
               159-1176, gnl|Hg17|chr17 (41458216-41459300)
               

               
               159-1176, gnl|Mm7|chr11 (104438069-104439116)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbr (1.79166)
               

               
               fce (0.814775)
               

               
               ecc (0.805246)
               

               
               ece (0.687916)
               

               
               ebs (0.473205)
               

               
               mas (0.210305)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.79166)
               

               
               fce (0.814775)
               

               
               ecc (0.805246)
               

               
               ece (0.687916)
               

               
               ebs (0.473205)
               

               
               mas (0.210305)
               

               
               eje (0.0988338)

	159-1176, gnl\|bosTau2\|chr19 (41943850-41942830)
	159-1176, gnl\|Hg17\|chr17 (41458216-41459300)
	159-1176, gnl\|Mm7\|chr11 (104438069-104439116)

	cbr (1.79166)
	fce (0.814775)
	ecc (0.805246)
	ece (0.687916)
	ebs (0.473205)
	mas (0.210305)
	eje (0.0988338)