Non-Coding RNA Search

Ss1.1-rcbr0_010671.5

Sequence:


               
               GCCCAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGC
AAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACTCTC
CATCTGGTTCTGCGTCTGAGGGGTGGTATGCAGATCTTCGTGAAGACCTTGACCGGCAAG
ACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCCAGATCCAG
GATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAA
GATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACTCTCCATCTGGTCCTC
CGTCTGAGGGGTGGCTGCTAATTCTCCAGTCTTGCATTCATAATGCCCCCTGATGGCATT
ACTCTGCACTCTAGCCCTTTGCCCCCATTTAAGTTTAGAAATTACCCGTTTCAGTAATAG
CTGAACCTGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGC
AAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACTCTC
CATCTGGTTCTGCGTCTGAGGGGTGGTATGCAGATCTTCGTGAAGACCTTGACCGGCAAG
ACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCCAGATCCAG
GATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAA
GATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACTCTCCATCTGGTCCTC
CGTCTGAGGGGTGGCTGCTAATTCTCCAGTCTTGCATTCATAATGCCCCCTGATGGCATT
ACTCTGCACTCTAGCCCTTTGCCCCCATTTAAGTTTAGAAATTACCCGTTTCAGTAATAG
CTGAACCTGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28189839|dbj|BAC56534.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28189839|dbj|BAC56534.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-146, - strand, RNAz p=0.964916
               

               
               148-320, - strand, RNAz p=0.97709

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-146, - strand, RNAz p=0.964916
               

               
               148-320, - strand, RNAz p=0.97709

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-146, gnl|bosTau2|chr12 (462736-462881)
               

               
               1-146, gnl|Hg17|chr17 (16226484-16226629)
               

               
               1-146, gnl|Mm7|chr11 (62634477-62634622)
               


               
               148-320, gnl|bosTau2|chr11 (21613178-21613350)
               

               
               148-320, gnl|Hg17|chr1 (189416970-189417142)
               

               
               148-320, gnl|Mm7|chr9 (83507906-83508066)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-146, gnl|bosTau2|chr12 (462736-462881)
               

               
               1-146, gnl|Hg17|chr17 (16226484-16226629)
               

               
               1-146, gnl|Mm7|chr11 (62634477-62634622)
               


               
               148-320, gnl|bosTau2|chr11 (21613178-21613350)
               

               
               148-320, gnl|Hg17|chr1 (189416970-189417142)
               

               
               148-320, gnl|Mm7|chr9 (83507906-83508066)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbr (1.0238)
               

               
               lin (0.145603)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.0238)
               

               
               lin (0.145603)
               

               
               cly (0.120642)

	1-146, - strand, RNAz p=0.964916
	148-320, - strand, RNAz p=0.97709

	1-146, gnl\|bosTau2\|chr12 (462736-462881)
	1-146, gnl\|Hg17\|chr17 (16226484-16226629)
	1-146, gnl\|Mm7\|chr11 (62634477-62634622)

	148-320, gnl\|bosTau2\|chr11 (21613178-21613350)
	148-320, gnl\|Hg17\|chr1 (189416970-189417142)
	148-320, gnl\|Mm7\|chr9 (83507906-83508066)