Non-Coding RNA Search

Ss1.1-rcbr0_010929.5

Sequence:


               
               CAGGTCCATGGAGAGGTAAGGAGCAAGTCTTGGGAGGGGGTGGGGTGTTTGGCCCTGGCG
TAGGAGCAGAGTGGAGCGTCATCTGAAGAGCTCTGAAGCCAAGCGTGGGAAAGAGCCCGA
GTTGGCCACCCGTGGTGTGGTGGAGAGAGGTGCTGCGTGCCTGGGGCAGATCTGTGAGTT
TTGTAGTTTTTACTCAGTGTGGGTGTGTAAAGACTCCGTTGTCCCGTCGTGATGGGTCCG
TCACTTCTGCCTGGCATGTCCCTGTTGTTGGTAGAACTTGTATCTGGAGGTGCTTCAGGG
CTGGCAGGGTTTTGGCTTAAGGACCTCATCATTTGATGTTTTTAGGTATCCTTGAAATCA
AAACCAGGGAAAAAGGGTGTTTGGTTTTTGTAGTGTTTTACAAAAAGGCATACAATGAGA
CTAGCAATGTTAGGGTAATGTGCTTACAATCATCAATGTGGTTTTTAAAGAGTTTATGAA
GAAAAGAGCATTTTCTTCTCAAGTTAAAAATTATGTATGCATATAATAATGATCTACATT
TACTTGAGGGCTTAGTGAAGTTAGATTTTATGAAGTTGGATGTGGATTGGTGTTTAGATG
GTCAGGCTCTACAAAAAAGGTGAAATCTTTAAACACAGCGGTGCTATGTTTTACCTGATA
ACACACAATACAGAAAGTGCTGAAAGGAATTACTATGTTTATTCAGTAATAATACAAGAG
TTCTTGCTAAATTATACATGTGTATCACTGCCTGATGAGAAACCCCCACTTTTCTAACCT
AGCACAAAATCCAACTGTGATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTCCATGGAGAGGTAAGGAGCAAGTCTTGGGAGGGGGTGGGGTGTTTGGCCCTGGCG
TAGGAGCAGAGTGGAGCGTCATCTGAAGAGCTCTGAAGCCAAGCGTGGGAAAGAGCCCGA
GTTGGCCACCCGTGGTGTGGTGGAGAGAGGTGCTGCGTGCCTGGGGCAGATCTGTGAGTT
TTGTAGTTTTTACTCAGTGTGGGTGTGTAAAGACTCCGTTGTCCCGTCGTGATGGGTCCG
TCACTTCTGCCTGGCATGTCCCTGTTGTTGGTAGAACTTGTATCTGGAGGTGCTTCAGGG
CTGGCAGGGTTTTGGCTTAAGGACCTCATCATTTGATGTTTTTAGGTATCCTTGAAATCA
AAACCAGGGAAAAAGGGTGTTTGGTTTTTGTAGTGTTTTACAAAAAGGCATACAATGAGA
CTAGCAATGTTAGGGTAATGTGCTTACAATCATCAATGTGGTTTTTAAAGAGTTTATGAA
GAAAAGAGCATTTTCTTCTCAAGTTAAAAATTATGTATGCATATAATAATGATCTACATT
TACTTGAGGGCTTAGTGAAGTTAGATTTTATGAAGTTGGATGTGGATTGGTGTTTAGATG
GTCAGGCTCTACAAAAAAGGTGAAATCTTTAAACACAGCGGTGCTATGTTTTACCTGATA
ACACACAATACAGAAAGTGCTGAAAGGAATTACTATGTTTATTCAGTAATAATACAAGAG
TTCTTGCTAAATTATACATGTGTATCACTGCCTGATGAGAAACCCCCACTTTTCTAACCT
AGCACAAAATCCAACTGTGATTCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               154-804, gnl|bosTau2|chr4 (41267096-41267756)
               

               
               154-804, gnl|Hg17|chr7 (87475480-87476127)
               

               
               154-804, gnl|Mm7|chr5 (8111315-8110759)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-804, gnl|bosTau2|chr4 (41267096-41267756)
               

               
               154-804, gnl|Hg17|chr7 (87475480-87476127)
               

               
               154-804, gnl|Mm7|chr5 (8111315-8110759)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbr (0.255951)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.255951)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	154-804, gnl\|bosTau2\|chr4 (41267096-41267756)
	154-804, gnl\|Hg17\|chr7 (87475480-87476127)
	154-804, gnl\|Mm7\|chr5 (8111315-8110759)