Non-Coding RNA Search

Ss1.1-rcbr0_011681.5

Sequence:


               
               ATTCGAATTCACTCGCTCTACAACTCGCCCCTCACAGAGTCCTGCCTTTCTCCCGCCGAG
GAGGAGCCAGCCCCCTGCAAGGACTGCCAGCCGCTCTGCCCGCCGCCAGCGGGCAGCTGG
GAACGGCAGCGGCAAGCCTCTGACGTAGCTTCTTCTGGGGTGGTGTCCTTAGACGAGGAT
GAGGTGGAGCCAGAGGAACAGTGACCCAAATCATGCCCGGTGGTGGCATGTGTCCCCTGG
CTGCTGCTGGGGGCAGAGCCTCTGCCCAGGCACGGGCGAGGCTTCCAGCAGAGCTCCACA
GCCTGGAGGGCTCCTGGGAGCACTCACTTCTTCGTTGTGTGTTTGCATGAAAGTGTTCAG
AGGAGGCAGGGGCCAGGCTGGGGGCGCATGTCCTGCCCCCACTCCGGGGGTTTGCCGGGG
GTTGCCCGGGGCCCCTGGGGCATGGCTACAGCTGTGGCAGACAGTGATGTTCATGTTCTT
CAATCAAAAACACCACGTACACATTTCCTCCTCGGGTGATGTGAACCCCTAAGGGGGTGG
CTGTGACTGGGCTGTGTGGGGTAGAGTGGGAGGGAGACCTGCCTCCCCCGCCCTCCACCG
CTTCTCTCTTCTCCGCTTTTCTCCTCACCTCCGAGTCCATGTGCAGTGCTTGACAGAATC
ACCCCTGCCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGAATTCACTCGCTCTACAACTCGCCCCTCACAGAGTCCTGCCTTTCTCCCGCCGAG
GAGGAGCCAGCCCCCTGCAAGGACTGCCAGCCGCTCTGCCCGCCGCCAGCGGGCAGCTGG
GAACGGCAGCGGCAAGCCTCTGACGTAGCTTCTTCTGGGGTGGTGTCCTTAGACGAGGAT
GAGGTGGAGCCAGAGGAACAGTGACCCAAATCATGCCCGGTGGTGGCATGTGTCCCCTGG
CTGCTGCTGGGGGCAGAGCCTCTGCCCAGGCACGGGCGAGGCTTCCAGCAGAGCTCCACA
GCCTGGAGGGCTCCTGGGAGCACTCACTTCTTCGTTGTGTGTTTGCATGAAAGTGTTCAG
AGGAGGCAGGGGCCAGGCTGGGGGCGCATGTCCTGCCCCCACTCCGGGGGTTTGCCGGGG
GTTGCCCGGGGCCCCTGGGGCATGGCTACAGCTGTGGCAGACAGTGATGTTCATGTTCTT
CAATCAAAAACACCACGTACACATTTCCTCCTCGGGTGATGTGAACCCCTAAGGGGGTGG
CTGTGACTGGGCTGTGTGGGGTAGAGTGGGAGGGAGACCTGCCTCCCCCGCCCTCCACCG
CTTCTCTCTTCTCCGCTTTTCTCCTCACCTCCGAGTCCATGTGCAGTGCTTGACAGAATC
ACCCCTGCCCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               11-129, - strand, RNAz p=0.922341
               

               
               170-596, + strand, RNAz p=0.999593

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               11-129, - strand, RNAz p=0.922341
               

               
               170-596, + strand, RNAz p=0.999593

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               66-157, - strand, RNAmicro p=0.960728

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               66-157, - strand, RNAmicro p=0.960728

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_144635, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_144635, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-670, gnl|bosTau2|chr1 (51116435-51115782)
               

               
               11-670, gnl|Hg17|chr3 (185545267-185545926)
               

               
               11-670, gnl|Mm7|chr16 (20251721-20252344)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-670, gnl|bosTau2|chr1 (51116435-51115782)
               

               
               11-670, gnl|Hg17|chr3 (185545267-185545926)
               

               
               11-670, gnl|Mm7|chr16 (20251721-20252344)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbr (1.66368)
               

               
               fcc (0.197785)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.66368)
               

               
               fcc (0.197785)

	11-129, - strand, RNAz p=0.922341
	170-596, + strand, RNAz p=0.999593

	11-670, gnl\|bosTau2\|chr1 (51116435-51115782)
	11-670, gnl\|Hg17\|chr3 (185545267-185545926)
	11-670, gnl\|Mm7\|chr16 (20251721-20252344)