Ss1.1-rcbr0_011949.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCGCAGGCGCGGAGCCTTCTCCTTGTCAGTGAGCGCCGCGTGCGGGTTTGTGACTCTG AGCGGCGGCGGCGGCGTCCAGTCTCCGGCACTATGAGCAGCTTCAGCAGCGAGGAGCGCT CCGCGCCTTTCACCCTCGAGTACCGAGTCTTCCTCAAAAATGAAAAAGGACAATATATAT CTCCATTTCATGATATTCCAATTTATGCAGATAAGGATGTGTTCCACATGGTGGTTGAAG TACCACGCTGGTCAAATGCAAAGATGGAGATTGCTACAAAGGACCCTTTAAACCCAATTA AGCAAGATGTGAAAAAGGGAAAACTCCGTTACGTTGCAAATTTGTTCCCTTATAAAGGAT ATATTTGGAACTATGGTGCCATCCCTCAGACTTGGGAAGACCCAGGACACAGTGACAAAC ACACTGGCTGTTGTGGTGACAATGACCCAATTGATGTGTGTGAAATTGGAAGCAAGGTAT GTGCCAGAGGGGAAATAATCAGGGTGAAAGTTCTGGGCATATTGGCAATGATCGATGAAG GCGAAACCGACTGGAAAGTCATTGCCATTAACGTGGATGATCCGGATGCAGCCAATTACA ATGATATTAATGATGTCAAGCGGCTGAAACCTGGCTACCTGGAAGCTACTGTGGACTGGT TTCGGAGGTACAAGGTCCCCGATGGAAAACCTGAGAACCAGTTTGCTTTCAATGCAGAAT TTAAAGATAAGGACTTTGCAGTTGATATTATTAAAAGCACTCATGACTATTGGAGAGCAT TAGTGACAAAGAAAACTGATGGAAAAGGAATCAGTTGCATGAATACCACCGTGTCCGAGA GCCCCTTCCAGTGTGATCCTGATGCTGCCAAAGCCATTGTGGATGCTTTACCACCACCAT GTGAATCTGCCTGCACAATACCAACAGATGTGGATAAGTGGTTCCATCACCAGAAAAACT AAGATACTTCTCTGGAATACCAGCTGATCTGCTGCATCTTATGTCATGTCTGAAACCATT AGACACAAAGTAGTAGTTTTTCAAAGCTTTAAATTTATAGAACTTATCTAATTAATCAAA TTCTGATGTGACCCATTCAATTATGTGATCATGGAAAAAAGCATTTTTCATGTCTCAATT AAAATAACTTTTAGTCCATGCTTAGAAGCAAGGCGGTTGTAGTTTGGAAATCATCTGTGA ATAAATGTGTAAGAAAAGTACATGTTGGATGTATATGTTTGCCATGTGTTTGAAATAAAA TTATTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCGCAGGCGCGGAGCCTTCTCCTTGTCAGTGAGCGCCGCGTGCGGGTTTGTGACTCTG AGCGGCGGCGGCGGCGTCCAGTCTCCGGCACTATGAGCAGCTTCAGCAGCGAGGAGCGCT CCGCGCCTTTCACCCTCGAGTACCGAGTCTTCCTCAAAAATGAAAAAGGACAATATATAT CTCCATTTCATGATATTCCAATTTATGCAGATAAGGATGTGTTCCACATGGTGGTTGAAG TACCACGCTGGTCAAATGCAAAGATGGAGATTGCTACAAAGGACCCTTTAAACCCAATTA AGCAAGATGTGAAAAAGGGAAAACTCCGTTACGTTGCAAATTTGTTCCCTTATAAAGGAT ATATTTGGAACTATGGTGCCATCCCTCAGACTTGGGAAGACCCAGGACACAGTGACAAAC ACACTGGCTGTTGTGGTGACAATGACCCAATTGATGTGTGTGAAATTGGAAGCAAGGTAT GTGCCAGAGGGGAAATAATCAGGGTGAAAGTTCTGGGCATATTGGCAATGATCGATGAAG GCGAAACCGACTGGAAAGTCATTGCCATTAACGTGGATGATCCGGATGCAGCCAATTACA ATGATATTAATGATGTCAAGCGGCTGAAACCTGGCTACCTGGAAGCTACTGTGGACTGGT TTCGGAGGTACAAGGTCCCCGATGGAAAACCTGAGAACCAGTTTGCTTTCAATGCAGAAT TTAAAGATAAGGACTTTGCAGTTGATATTATTAAAAGCACTCATGACTATTGGAGAGCAT TAGTGACAAAGAAAACTGATGGAAAAGGAATCAGTTGCATGAATACCACCGTGTCCGAGA GCCCCTTCCAGTGTGATCCTGATGCTGCCAAAGCCATTGTGGATGCTTTACCACCACCAT GTGAATCTGCCTGCACAATACCAACAGATGTGGATAAGTGGTTCCATCACCAGAAAAACT AAGATACTTCTCTGGAATACCAGCTGATCTGCTGCATCTTATGTCATGTCTGAAACCATT AGACACAAAGTAGTAGTTTTTCAAAGCTTTAAATTTATAGAACTTATCTAATTAATCAAA TTCTGATGTGACCCATTCAATTATGTGATCATGGAAAAAAGCATTTTTCATGTCTCAATT AAAATAACTTTTAGTCCATGCTTAGAAGCAAGGCGGTTGTAGTTTGGAAATCATCTGTGA ATAAATGTGTAAGAAAAGTACATGTTGGATGTATATGTTTGCCATGTGTTTGAAATAAAA TTATTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 1-156, gnl|bosTau2|chr28 (19349528-19349699) | |
| 1-156, gnl|canFam2|chr21 (45895610-45895550) | |
| 1-156, gnl|dasNov1|scaffold_144402 (1758-1669) | |
| 1-156, gnl|echTel1|scaffold_216713 (2942-2860) | |
| 1-156, gnl|Hg17|chr10 (71663179-71663026) | |
| 1-156, gnl|hg17|chr5 (172335056-172335143) | |
| 1-156, gnl|loxAfr1|scaffold_435 (146186-146103) | |
| 1-156, gnl|Mm7|chr10 (61167087-61167249) | |
| 1-156, gnl|mm7|chr2 (51239254-51239318) | |
| 1-156, gnl|monDom2|scaffold_120 (968591-968502) | |
| 1-156, gnl|oryCun1|scaffold_172915 (61056-61138) | |
| 1-156, gnl|panTro1|chr4 (179659650-179659737) | |
| 1-156, gnl|rheMac2|chr2 (160152980-160152895) | |
| 1-156, gnl|rn3|chr20 (29029519-29029598) | |
| 268-389, gnl|bosTau2|chr28 (19368437-19368558) | |
| 268-389, gnl|canFam2|chr21 (45895276-45895396) | |
| 268-389, gnl|canFam2|chr21 (45895393-45895279) | |
| 268-389, gnl|canFam2|chr4 (24373210-24373329) | |
| 268-389, gnl|danRer3|chr13 (31447187-31447307) | |
| 268-389, gnl|danRer3|chr13 (31447187-31447306) | |
| 268-389, gnl|danRer3|chr13 (31447305-31447190) | |
| 268-389, gnl|dasNov1|scaffold_144402 (1455-1576) | |
| 268-389, gnl|dasNov1|scaffold_144402 (1455-1575) | |
| 268-389, gnl|dasNov1|scaffold_144402 (1574-1458) | |
| 268-389, gnl|echTel1|scaffold_101623 (778-659) | |
| 268-389, gnl|echTel1|scaffold_319784 (88153-88033) | |
| 268-389, gnl|echTel1|scaffold_319784 (88035-88150) | |
| 268-389, gnl|fr1|chrUn (59269096-59269216) | |
| 268-389, gnl|fr1|chrUn (59269096-59269215) | |
| 268-389, gnl|fr1|chrUn (20275462-20275347) | |
| 268-389, gnl|hg17|chr10 (71647575-71647694) | |
| 268-389, gnl|Hg17|chr10 (71647695-71647574) | |
| 268-389, gnl|hg17|chr3 (17888799-17888919) | |
| 268-389, gnl|hg17|chr5 (172335299-172335414) | |
| 268-389, gnl|loxAfr1|scaffold_435 (145825-145945) | |
| 268-389, gnl|loxAfr1|scaffold_435 (145943-145828) | |
| 268-389, gnl|loxAfr1|scaffold_7106 (47171-47290) | |
| 268-389, gnl|mm7|chr10 (61179490-61179371) | |
| 268-389, gnl|Mm7|chr10 (61179368-61179489) | |
| 268-389, gnl|mm7|chr2 (51239595-51239473) | |
| 268-389, gnl|mm7|chr2 (51239475-51239592) | |
| 268-389, gnl|monDom2|scaffold_189 (919836-919956) | |
| 268-389, gnl|monDom2|scaffold_189 (919954-919839) | |
| 268-389, gnl|monDom2|scaffold_41 (20409214-20409095) | |
| 268-389, gnl|oryCun1|scaffold_143749 (2347-2229) | |
| 268-389, gnl|oryCun1|scaffold_143749 (2231-2344) | |
| 268-389, gnl|oryCun1|scaffold_175585 (1152-1271) | |
| 268-389, gnl|panTro1|chr2 (18580983-18581103) | |
| 268-389, gnl|panTro1|chr4 (179659893-179660008) | |
| 268-389, gnl|panTro1|chr8 (72817328-72817447) | |
| 268-389, gnl|rheMac2|chr2 (160152620-160152740) | |
| 268-389, gnl|rheMac2|chr2 (160152738-160152623) | |
| 268-389, gnl|rheMac2|chr9 (66794005-66793886) | |
| 268-389, gnl|rn3|chr20 (29040894-29040777) | |
| 268-389, gnl|rn3|chr20 (29040897-29040778) | |
| 268-389, gnl|rn3|chr20 (29040779-29040894) | |
| 268-389, gnl|tetNig1|chr17 (5986909-5987028) | |
| 268-389, gnl|tetNig1|chr17 (5986909-5987027) | |
| 268-389, gnl|tetNig1|chr17 (5987026-5986912) | |
| 268-389, gnl|xenTro1|scaffold_171 (147444-147327) | |
| 268-389, gnl|xenTro1|scaffold_171 (147447-147328) | |
| 603-732, gnl|bosTau2|chr28 (19380075-19380204) | |
| 603-732, gnl|Hg17|chr10 (71639448-71639319) | |
| 603-732, gnl|Mm7|chr10 (61185368-61185497) | |
| 938-1278, gnl|bosTau2|chr17 (3070931-3070586) | |
| 938-1278, gnl|Hg17|chr10 (71632941-71632588) | |
| 938-1278, gnl|Mm7|chr10 (61192285-61192626) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-156, gnl|bosTau2|chr28 (19349528-19349699) | |
| 1-156, gnl|canFam2|chr21 (45895610-45895550) | |
| 1-156, gnl|dasNov1|scaffold_144402 (1758-1669) | |
| 1-156, gnl|echTel1|scaffold_216713 (2942-2860) | |
| 1-156, gnl|Hg17|chr10 (71663179-71663026) | |
| 1-156, gnl|hg17|chr5 (172335056-172335143) | |
| 1-156, gnl|loxAfr1|scaffold_435 (146186-146103) | |
| 1-156, gnl|Mm7|chr10 (61167087-61167249) | |
| 1-156, gnl|mm7|chr2 (51239254-51239318) | |
| 1-156, gnl|monDom2|scaffold_120 (968591-968502) | |
| 1-156, gnl|oryCun1|scaffold_172915 (61056-61138) | |
| 1-156, gnl|panTro1|chr4 (179659650-179659737) | |
| 1-156, gnl|rheMac2|chr2 (160152980-160152895) | |
| 1-156, gnl|rn3|chr20 (29029519-29029598) | |
| 268-389, gnl|bosTau2|chr28 (19368437-19368558) | |
| 268-389, gnl|canFam2|chr21 (45895276-45895396) | |
| 268-389, gnl|canFam2|chr21 (45895393-45895279) | |
| 268-389, gnl|canFam2|chr4 (24373210-24373329) | |
| 268-389, gnl|danRer3|chr13 (31447187-31447307) | |
| 268-389, gnl|danRer3|chr13 (31447187-31447306) | |
| 268-389, gnl|danRer3|chr13 (31447305-31447190) | |
| 268-389, gnl|dasNov1|scaffold_144402 (1455-1576) | |
| 268-389, gnl|dasNov1|scaffold_144402 (1455-1575) | |
| 268-389, gnl|dasNov1|scaffold_144402 (1574-1458) | |
| 268-389, gnl|echTel1|scaffold_101623 (778-659) | |
| 268-389, gnl|echTel1|scaffold_319784 (88153-88033) | |
| 268-389, gnl|echTel1|scaffold_319784 (88035-88150) | |
| 268-389, gnl|fr1|chrUn (59269096-59269216) | |
| 268-389, gnl|fr1|chrUn (59269096-59269215) | |
| 268-389, gnl|fr1|chrUn (20275462-20275347) | |
| 268-389, gnl|hg17|chr10 (71647575-71647694) | |
| 268-389, gnl|Hg17|chr10 (71647695-71647574) | |
| 268-389, gnl|hg17|chr3 (17888799-17888919) | |
| 268-389, gnl|hg17|chr5 (172335299-172335414) | |
| 268-389, gnl|loxAfr1|scaffold_435 (145825-145945) | |
| 268-389, gnl|loxAfr1|scaffold_435 (145943-145828) | |
| 268-389, gnl|loxAfr1|scaffold_7106 (47171-47290) | |
| 268-389, gnl|mm7|chr10 (61179490-61179371) | |
| 268-389, gnl|Mm7|chr10 (61179368-61179489) | |
| 268-389, gnl|mm7|chr2 (51239595-51239473) | |
| 268-389, gnl|mm7|chr2 (51239475-51239592) | |
| 268-389, gnl|monDom2|scaffold_189 (919836-919956) | |
| 268-389, gnl|monDom2|scaffold_189 (919954-919839) | |
| 268-389, gnl|monDom2|scaffold_41 (20409214-20409095) | |
| 268-389, gnl|oryCun1|scaffold_143749 (2347-2229) | |
| 268-389, gnl|oryCun1|scaffold_143749 (2231-2344) | |
| 268-389, gnl|oryCun1|scaffold_175585 (1152-1271) | |
| 268-389, gnl|panTro1|chr2 (18580983-18581103) | |
| 268-389, gnl|panTro1|chr4 (179659893-179660008) | |
| 268-389, gnl|panTro1|chr8 (72817328-72817447) | |
| 268-389, gnl|rheMac2|chr2 (160152620-160152740) | |
| 268-389, gnl|rheMac2|chr2 (160152738-160152623) | |
| 268-389, gnl|rheMac2|chr9 (66794005-66793886) | |
| 268-389, gnl|rn3|chr20 (29040894-29040777) | |
| 268-389, gnl|rn3|chr20 (29040897-29040778) | |
| 268-389, gnl|rn3|chr20 (29040779-29040894) | |
| 268-389, gnl|tetNig1|chr17 (5986909-5987028) | |
| 268-389, gnl|tetNig1|chr17 (5986909-5987027) | |
| 268-389, gnl|tetNig1|chr17 (5987026-5986912) | |
| 268-389, gnl|xenTro1|scaffold_171 (147444-147327) | |
| 268-389, gnl|xenTro1|scaffold_171 (147447-147328) | |
| 603-732, gnl|bosTau2|chr28 (19380075-19380204) | |
| 603-732, gnl|Hg17|chr10 (71639448-71639319) | |
| 603-732, gnl|Mm7|chr10 (61185368-61185497) | |
| 938-1278, gnl|bosTau2|chr17 (3070931-3070586) | |
| 938-1278, gnl|Hg17|chr10 (71632941-71632588) | |
| 938-1278, gnl|Mm7|chr10 (61192285-61192626) |
| Expressed library(ies): 55 entry(ies) | More info |
| Expressed library(ies): 55 entry(ies) | Help | Less info |
| cbr (17.2767) | |
| cbe (5.50239) | |
| spc (2.04059) | |
| lyg (1.46413) | |
| ret (1.41607) | |
| sin (1.39958) | |
| rec (1.03842) | |
| vin (0.997672) | |
| lun (0.902935) | |
| bfe (0.899146) | |
| tra (0.861645) | |
| ski (0.733676) | |
| lin (0.728014) | |
| sto (0.719295) | |
| cga (0.558191) | |
| sag (0.548145) | |
| ssp (0.542079) | |
| fco (0.471624) | |
| spl (0.429553) | |
| ste (0.405625) | |
| sug (0.381874) | |
| cmu (0.372787) | |
| nep (0.36785) | |
| ebs (0.354904) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| cag (0.302389) | |
| isp (0.300752) | |
| jej (0.296765) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| kid (0.259471) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| fat (0.147427) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) |
| Expressed library(ies): 55 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (17.2767) | |
| cbe (5.50239) | |
| spc (2.04059) | |
| lyg (1.46413) | |
| ret (1.41607) | |
| sin (1.39958) | |
| rec (1.03842) | |
| vin (0.997672) | |
| lun (0.902935) | |
| bfe (0.899146) | |
| tra (0.861645) | |
| ski (0.733676) | |
| lin (0.728014) | |
| sto (0.719295) | |
| cga (0.558191) | |
| sag (0.548145) | |
| ssp (0.542079) | |
| fco (0.471624) | |
| spl (0.429553) | |
| ste (0.405625) | |
| sug (0.381874) | |
| cmu (0.372787) | |
| nep (0.36785) | |
| ebs (0.354904) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| cag (0.302389) | |
| isp (0.300752) | |
| jej (0.296765) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| kid (0.259471) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| fat (0.147427) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) |