Non-Coding RNA Search

Ss1.1-rcbr0_011991.5

Sequence:


               
               GGCTGCAGGAATCGAATTCACCACACCTGGCCAGTACGTGCTGACCGGCTTGCAGAGCGG
GCAGCCCAAGCACCTGCTCCTGGTGGACCCTGAGGGTGTGGTTCGGACAAAGGATCACCG
CTTTGAGAGTGTCAGTCACCTCATCAGCTACCACATGGACAATCACTTGCCCATCATCTC
TGCGGGCAGCGAACTGTGTCTCCAGCAACCTGTGGAGAGGAAACTGTGATCTGTCCCAGT
GCTCTCTCCCAGAAGATGCCCTGCGACTCCTACCACCCTGTTCCCTCTCAGGACCTCACT
CGGGAGTGTTCTGTGGGCTTGGCCCTGCATAGGGCTGGGGGTAGTGTGGACAGTGGGTTC
AGCATCCAGCTGAGGGAGAGGGTTTGAGTCAGGAGCCAGGGGTAGAGTCCTGCTTCTCCC
CAAACCTCACCAAAGTATTAATGTACAGAGCGGCCCCCTTCCCTGGGCCTTTCCTGTGCC
AACTTGATACCCCCTTCCCCAAGGTGGGTACTGGAGGCCTAGGCAGTGTGCCTCCTTGTG
CTGGAACATGTCCTGTGGTGATTGGCCCAGTGGCGACATCACCCTTCCAGGGAACGGGGA
ATGAATCACACCTTTAGTCCACCCCTGGGCTCAGGGTACCCCAGACCCCTCTCAAACCAC
CCTCTTTCCGAGCATTTAAACTTTGTGCCTTTGACCATCTGCTAGGTCTGAAGATATTTT
ATGCAAAGAGCTCTTGGGCCCCTGAGGTCAAGGACACGGGTGCTGACACCTTGGCTTCTG
GGACCCGGTCCTCTCCTTGCTCAGCACCCTCTCCAGTTCAGGTTGGACGAAGAGAGGCAG
GAGTGGCAACTGTCCCCTCTCCCCGGGGATATGCCACCCTTAGAGACTGCCTCAGAGCCC
CCCTCTTGGCCAGTGGGGAGATGGACCCCTCCCTTGCTCAGTGCCTCCTGGCCAGGACCC
CTGGCCCCAGGGGTCTGTATATAAACATTTCGTACACCCACCCCTCCCATGTTGCATGCA
TGTTATATCTACAGCCAAAGTATAGCCCTTCTTCCTGTAGCCTCTGCCCTGCCTCCCCCT
GCTGGGGGGATAGGGGTGATGACTGAACTATCCATTCTCCCAGGTGGATTTTTGTGGAGG
TGGGAACAGGGGCCTTGAGACTCTAAAGCAGTAGACAATCCCCAAATATCATTGGTAGAT
TTGGAACTGCATTTATTTTTTATTTTATTCGCCTATGTTTTAGGGCTGTAGATTTACTTT
CCTCATTTGTTTTCCATAGCTTCTTCTTGAGCACAAAATGATAATAATCGGTAGCGTTTC
TACATCACCTCTTTGACTCTTCAAAGCCCTTTTACAACTCCTGACCTTTTCCTCACCCCA
GCTTGTGAAGCAGTTGGGACCGGCAGCAGCCTCTCTTCCACCGGAGAGAACTGAGTCTGA
GTGTGAACTAGGACTAGAGAAACTTGGGCCTTCCACCACCAGGCCGGGAGGCACAAGTTG
GGCTGAATTAGTGCTAGTTTCCCACGGGGGTCGGGGGGACTTTCAACCCGCAGTTTCGGA
GTCCCTTGTCCAAGCCGGGCCCTGCCGCAAAGACAGAGAAGCCGGTCCTGCTCTGTCCTT
AGGTCCCGTGGATAAGGGAGAAGCACTGTCTAAATCCTCGCCTCCTCTTTTATAAATTGT
TTTTTTTTTTTTTTTTCTTTTTGTTTGGATGTCTTCACGGGTCTCACTTATACCAAAGGG
GAAGAATCTTCATTAAAATCCATATTTCTTCTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGCAGGAATCGAATTCACCACACCTGGCCAGTACGTGCTGACCGGCTTGCAGAGCGG
GCAGCCCAAGCACCTGCTCCTGGTGGACCCTGAGGGTGTGGTTCGGACAAAGGATCACCG
CTTTGAGAGTGTCAGTCACCTCATCAGCTACCACATGGACAATCACTTGCCCATCATCTC
TGCGGGCAGCGAACTGTGTCTCCAGCAACCTGTGGAGAGGAAACTGTGATCTGTCCCAGT
GCTCTCTCCCAGAAGATGCCCTGCGACTCCTACCACCCTGTTCCCTCTCAGGACCTCACT
CGGGAGTGTTCTGTGGGCTTGGCCCTGCATAGGGCTGGGGGTAGTGTGGACAGTGGGTTC
AGCATCCAGCTGAGGGAGAGGGTTTGAGTCAGGAGCCAGGGGTAGAGTCCTGCTTCTCCC
CAAACCTCACCAAAGTATTAATGTACAGAGCGGCCCCCTTCCCTGGGCCTTTCCTGTGCC
AACTTGATACCCCCTTCCCCAAGGTGGGTACTGGAGGCCTAGGCAGTGTGCCTCCTTGTG
CTGGAACATGTCCTGTGGTGATTGGCCCAGTGGCGACATCACCCTTCCAGGGAACGGGGA
ATGAATCACACCTTTAGTCCACCCCTGGGCTCAGGGTACCCCAGACCCCTCTCAAACCAC
CCTCTTTCCGAGCATTTAAACTTTGTGCCTTTGACCATCTGCTAGGTCTGAAGATATTTT
ATGCAAAGAGCTCTTGGGCCCCTGAGGTCAAGGACACGGGTGCTGACACCTTGGCTTCTG
GGACCCGGTCCTCTCCTTGCTCAGCACCCTCTCCAGTTCAGGTTGGACGAAGAGAGGCAG
GAGTGGCAACTGTCCCCTCTCCCCGGGGATATGCCACCCTTAGAGACTGCCTCAGAGCCC
CCCTCTTGGCCAGTGGGGAGATGGACCCCTCCCTTGCTCAGTGCCTCCTGGCCAGGACCC
CTGGCCCCAGGGGTCTGTATATAAACATTTCGTACACCCACCCCTCCCATGTTGCATGCA
TGTTATATCTACAGCCAAAGTATAGCCCTTCTTCCTGTAGCCTCTGCCCTGCCTCCCCCT
GCTGGGGGGATAGGGGTGATGACTGAACTATCCATTCTCCCAGGTGGATTTTTGTGGAGG
TGGGAACAGGGGCCTTGAGACTCTAAAGCAGTAGACAATCCCCAAATATCATTGGTAGAT
TTGGAACTGCATTTATTTTTTATTTTATTCGCCTATGTTTTAGGGCTGTAGATTTACTTT
CCTCATTTGTTTTCCATAGCTTCTTCTTGAGCACAAAATGATAATAATCGGTAGCGTTTC
TACATCACCTCTTTGACTCTTCAAAGCCCTTTTACAACTCCTGACCTTTTCCTCACCCCA
GCTTGTGAAGCAGTTGGGACCGGCAGCAGCCTCTCTTCCACCGGAGAGAACTGAGTCTGA
GTGTGAACTAGGACTAGAGAAACTTGGGCCTTCCACCACCAGGCCGGGAGGCACAAGTTG
GGCTGAATTAGTGCTAGTTTCCCACGGGGGTCGGGGGGACTTTCAACCCGCAGTTTCGGA
GTCCCTTGTCCAAGCCGGGCCCTGCCGCAAAGACAGAGAAGCCGGTCCTGCTCTGTCCTT
AGGTCCCGTGGATAAGGGAGAAGCACTGTCTAAATCCTCGCCTCCTCTTTTATAAATTGT
TTTTTTTTTTTTTTTTCTTTTTGTTTGGATGTCTTCACGGGTCTCACTTATACCAAAGGG
GAAGAATCTTCATTAAAATCCATATTTCTTCTAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1943487|pdb|1MIL|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1943487|pdb|1MIL|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               249-505, + strand, RNAz p=0.998062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-505, + strand, RNAz p=0.998062

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               29-587, gnl|bosTau2|chr10 (69552442-69552989)
               

               
               29-587, gnl|Hg17|chrX (63436834-63437399)
               

               
               29-587, gnl|Mm7|chr18 (8619604-8620138)
               


               
               850-1691, gnl|bosTau2|chr10 (69553261-69554085)
               

               
               850-1691, gnl|Hg17|chrX (63437679-63438520)
               

               
               850-1691, gnl|Mm7|chr18 (8620433-8621321)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-587, gnl|bosTau2|chr10 (69552442-69552989)
               

               
               29-587, gnl|Hg17|chrX (63436834-63437399)
               

               
               29-587, gnl|Mm7|chr18 (8619604-8620138)
               


               
               850-1691, gnl|bosTau2|chr10 (69553261-69554085)
               

               
               850-1691, gnl|Hg17|chrX (63437679-63438520)
               

               
               850-1691, gnl|Mm7|chr18 (8620433-8621321)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               cbr (164.704)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               nbm (0.297974)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (164.704)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               nbm (0.297974)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	29-587, gnl\|bosTau2\|chr10 (69552442-69552989)
	29-587, gnl\|Hg17\|chrX (63436834-63437399)
	29-587, gnl\|Mm7\|chr18 (8619604-8620138)

	850-1691, gnl\|bosTau2\|chr10 (69553261-69554085)
	850-1691, gnl\|Hg17\|chrX (63437679-63438520)
	850-1691, gnl\|Mm7\|chr18 (8620433-8621321)

	cbr (164.704)
	mcp (0.341297)
	cag (0.302389)
	nbm (0.297974)
	cga (0.279096)
	fce (0.271592)
	sug (0.254582)
	ece (0.229305)
	eye (0.170503)
	fhi (0.169578)
	eli (0.151814)
	lnt (0.142308)
	cst (0.140036)
	ute (0.132784)
	ese (0.126502)
	pgl (0.118483)
	ebs (0.118301)
	cty (0.10408)
	jej (0.0989218)