Ss1.1-rcbr0_012032.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGCGCCCGCCGCTCTCCGCCGGGCGGGCCGGGCGGACGGCCCTGGGCGCGGACTCCAG CGCCCGGCTCCCACCCTCACCTCCCGCGGGCGAGCCGCTGCAGAGGGAGCGCCAGGCCGG GGAGGAGTGCGGGCTCGCTCGGCAAGTGAGCGCAGAGGTCGAGAAATGGGTTCGAGTGAA CCGGAGACCCCGAAAACGGAAACGAAGGGAGACCGAAGAAGTGTTTGCAAAGCTTCTTCC AGACCAGCTGCTCTTGCTTCTGGAGCATCTCTTAGAGCAGACGACCTTGAACCCTCGAAC CCTGCAACGCCTTGAGCGGACATACCACCTCCCGGAGCAGGATGCAGAGGTTCGCCATCG ATGGTGTGAACTTGTCGTTAAGCACAAATACAAAAAAGCGTATGGACATGTGGAAAGGTT CCTTCAAGAGGATCAGGCCATGGGCATCTACCTCTACGGGGAGCTGATGGTGAACGAGGA CGCCCGGCAGCAGCAACTGGCCCGCAAGTGCTTCGAGCTGAGCAAGGAGCAGATGGATAG ATCCTCAGCCGAGGTGGTGGCCGAGATGTTATTTTAAAGAGGAAAGATCACAGTGAGATT CCTTTTCATGCATCTATTGCTAGCCCTGGTGAGAGACCAGGATCGCATTGACCCTGACAT CAAAGGAAGGATTATGGGGCTGCTAAAGCCATCAGCCGCCGGCAGTGTGCACATCGTGGG CTGACTTTCCCAGAGGCTCTCCCAGTGGAGCTCGTGTAGAAGGCCTCACAGGGCCGTGGT GGCTTTGTCCCCACCCTGGATGTGCCACCTCTTTGTCCCCACCCTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGCGCCCGCCGCTCTCCGCCGGGCGGGCCGGGCGGACGGCCCTGGGCGCGGACTCCAG CGCCCGGCTCCCACCCTCACCTCCCGCGGGCGAGCCGCTGCAGAGGGAGCGCCAGGCCGG GGAGGAGTGCGGGCTCGCTCGGCAAGTGAGCGCAGAGGTCGAGAAATGGGTTCGAGTGAA CCGGAGACCCCGAAAACGGAAACGAAGGGAGACCGAAGAAGTGTTTGCAAAGCTTCTTCC AGACCAGCTGCTCTTGCTTCTGGAGCATCTCTTAGAGCAGACGACCTTGAACCCTCGAAC CCTGCAACGCCTTGAGCGGACATACCACCTCCCGGAGCAGGATGCAGAGGTTCGCCATCG ATGGTGTGAACTTGTCGTTAAGCACAAATACAAAAAAGCGTATGGACATGTGGAAAGGTT CCTTCAAGAGGATCAGGCCATGGGCATCTACCTCTACGGGGAGCTGATGGTGAACGAGGA CGCCCGGCAGCAGCAACTGGCCCGCAAGTGCTTCGAGCTGAGCAAGGAGCAGATGGATAG ATCCTCAGCCGAGGTGGTGGCCGAGATGTTATTTTAAAGAGGAAAGATCACAGTGAGATT CCTTTTCATGCATCTATTGCTAGCCCTGGTGAGAGACCAGGATCGCATTGACCCTGACAT CAAAGGAAGGATTATGGGGCTGCTAAAGCCATCAGCCGCCGGCAGTGTGCACATCGTGGG CTGACTTTCCCAGAGGCTCTCCCAGTGGAGCTCGTGTAGAAGGCCTCACAGGGCCGTGGT GGCTTTGTCCCCACCCTGGATGTGCCACCTCTTTGTCCCCACCCTGAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 231-351, gnl|bosTau2|chr8 (44343373-44343253) | |
| 231-351, gnl|canFam2|chr1 (74755108-74754959) | |
| 231-351, gnl|dasNov1|scaffold_2488 (10635-10482) | |
| 231-351, gnl|echTel1|scaffold_242572 (6454-6301) | |
| 231-351, gnl|galGal2|chrZ_random (14185575-14185727) | |
| 231-351, gnl|hg17|chr9 (94902499-94902652) | |
| 231-351, gnl|Hg17|chr9 (94902529-94902649) | |
| 231-351, gnl|loxAfr1|scaffold_164486 (987-834) | |
| 231-351, gnl|mm7|chr13 (61104377-61104528) | |
| 231-351, gnl|Mm7|chr13 (61104405-61104525) | |
| 231-351, gnl|monDom2|scaffold_83 (1504204-1504051) | |
| 231-351, gnl|oryCun1|scaffold_179984 (17346-17500) | |
| 231-351, gnl|panTro1|chrUn_random (31698560-31698407) | |
| 231-351, gnl|rheMac2|chr15 (106872910-106873063) | |
| 231-351, gnl|rn3|chr17 (7370141-7369991) | |
| 231-351, gnl|xenTro1|scaffold_528 (808738-808891) | |
| 434-582, gnl|bosTau2|chr8 (44321729-44321581) | |
| 434-582, gnl|canFam2|chr1 (74736646-74736477) | |
| 434-582, gnl|danRer3|chr8 (24580827-24581013) | |
| 434-582, gnl|dasNov1|scaffold_20018 (11003-10836) | |
| 434-582, gnl|echTel1|scaffold_321881 (3607-3777) | |
| 434-582, gnl|fr1|chrUn (22119841-22119675) | |
| 434-582, gnl|galGal2|chrZ_random (14201472-14201634) | |
| 434-582, gnl|hg17|chr9 (94924410-94924579) | |
| 434-582, gnl|Hg17|chr9 (94924409-94924557) | |
| 434-582, gnl|loxAfr1|scaffold_32929 (16715-16548) | |
| 434-582, gnl|mm7|chr13 (61120975-61121142) | |
| 434-582, gnl|Mm7|chr13 (61120974-61121122) | |
| 434-582, gnl|monDom2|scaffold_83 (1465151-1464983) | |
| 434-582, gnl|oryCun1|scaffold_195007 (16072-15889) | |
| 434-582, gnl|panTro1|chrUn_random (31676271-31676102) | |
| 434-582, gnl|rheMac2|chr15 (106896495-106896665) | |
| 434-582, gnl|rn3|chr17 (7353570-7353401) | |
| 434-582, gnl|tetNig1|chr12 (8532526-8532693) | |
| 434-582, gnl|xenTro1|scaffold_528 (831823-831979) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 231-351, gnl|bosTau2|chr8 (44343373-44343253) | |
| 231-351, gnl|canFam2|chr1 (74755108-74754959) | |
| 231-351, gnl|dasNov1|scaffold_2488 (10635-10482) | |
| 231-351, gnl|echTel1|scaffold_242572 (6454-6301) | |
| 231-351, gnl|galGal2|chrZ_random (14185575-14185727) | |
| 231-351, gnl|hg17|chr9 (94902499-94902652) | |
| 231-351, gnl|Hg17|chr9 (94902529-94902649) | |
| 231-351, gnl|loxAfr1|scaffold_164486 (987-834) | |
| 231-351, gnl|mm7|chr13 (61104377-61104528) | |
| 231-351, gnl|Mm7|chr13 (61104405-61104525) | |
| 231-351, gnl|monDom2|scaffold_83 (1504204-1504051) | |
| 231-351, gnl|oryCun1|scaffold_179984 (17346-17500) | |
| 231-351, gnl|panTro1|chrUn_random (31698560-31698407) | |
| 231-351, gnl|rheMac2|chr15 (106872910-106873063) | |
| 231-351, gnl|rn3|chr17 (7370141-7369991) | |
| 231-351, gnl|xenTro1|scaffold_528 (808738-808891) | |
| 434-582, gnl|bosTau2|chr8 (44321729-44321581) | |
| 434-582, gnl|canFam2|chr1 (74736646-74736477) | |
| 434-582, gnl|danRer3|chr8 (24580827-24581013) | |
| 434-582, gnl|dasNov1|scaffold_20018 (11003-10836) | |
| 434-582, gnl|echTel1|scaffold_321881 (3607-3777) | |
| 434-582, gnl|fr1|chrUn (22119841-22119675) | |
| 434-582, gnl|galGal2|chrZ_random (14201472-14201634) | |
| 434-582, gnl|hg17|chr9 (94924410-94924579) | |
| 434-582, gnl|Hg17|chr9 (94924409-94924557) | |
| 434-582, gnl|loxAfr1|scaffold_32929 (16715-16548) | |
| 434-582, gnl|mm7|chr13 (61120975-61121142) | |
| 434-582, gnl|Mm7|chr13 (61120974-61121122) | |
| 434-582, gnl|monDom2|scaffold_83 (1465151-1464983) | |
| 434-582, gnl|oryCun1|scaffold_195007 (16072-15889) | |
| 434-582, gnl|panTro1|chrUn_random (31676271-31676102) | |
| 434-582, gnl|rheMac2|chr15 (106896495-106896665) | |
| 434-582, gnl|rn3|chr17 (7353570-7353401) | |
| 434-582, gnl|tetNig1|chr12 (8532526-8532693) | |
| 434-582, gnl|xenTro1|scaffold_528 (831823-831979) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cbr (0.511902) | |
| cli (0.305623) | |
| pla (0.267344) | |
| mas (0.210305) | |
| nco (0.161734) | |
| cly (0.120642) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.511902) | |
| cli (0.305623) | |
| pla (0.267344) | |
| mas (0.210305) | |
| nco (0.161734) | |
| cly (0.120642) | |
| jca (0.11396) | |
| cty (0.10408) |