Non-Coding RNA Search

Ss1.1-rcbr0_012057.5

Sequence:


               
               CATTTTGAGGGGAACCCGTGCCCCTGGGCGGCGGCCGGGCCACCCCAGCCCCTCTCCTTT
CCCGGACTCCGGCTGTTGCTGCAGCCCGGGTGTTTGCTCAGTTCGCTGACCCGAAAGTGC
TTCATGTCCCTGCCTGACCCTCACTGGGGACGGCCAGTCGTGTATTACGTTGCGCTTCTT
TGCTTCGTGCGGGTGGGACCAGGAGGAAGAGGACACCGCCTCCAGCCCAGGTCCTAAGTC
TGGGCTGCCAGGTCTTCTCACCCCACCTCGGAGACCAGACAAACCCCACTGACCTGCTGT
GGCCTCTGAGATGCGCTCCACTTTGAACCGCTTCTTGGAATTGGCTCTCTCCTTCAAAGG
ACCAGGTCCTGTTCTTTGTCCCCCTTGCCACCCAGCTCCCGGCGAAGAGAGAGTTAATAT
ATATTTTTTATTTATTTGCTTTTTGCGTTGGGATGGGTTCCTCGCCAGTCCCGGGGGTCT
GATGTGGCCGTCACAGGTTGGGTAATGTACCCAGCAGTCCTGGCGAGGGGGCCTGCGGCC
CTTCTCCTTGCCCCGGGCTGTATCTCCCCACCTCCCCCTCTCTCCCGTTTTCGCCAACCG
CTATTCATTGAGTCACCATTTAAGCTAAGCATGGATACCAGACTTGTCACTGACTTTCCT
CTGGAGCAGGTGGCTAGAAAAAGAGGTTACGAGCAGAAAAAACGTTCCCGTGTCTCATTT
GTAAGGCTGGCCTCTGGCTTTTCTGCCATGGATCCTTCGCCTGGCCTCTCCCCCCAGCAA
TTCCTGCAAAGGATTAAAAATGTAACTGGTTTTTACTACTGATGACTTGACTTAAAAAAA
ATACAAAGATGCTGGATGCTAACTTGATGCTAACCATTTGATTGTACAGTTTGATTGTTA
CTGTAAATACATAGAGTTTGGTGTTTGGTTTTCTCATTTTCCCATACTAGTGAATAAACT
AGTTCTGTGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTTGAGGGGAACCCGTGCCCCTGGGCGGCGGCCGGGCCACCCCAGCCCCTCTCCTTT
CCCGGACTCCGGCTGTTGCTGCAGCCCGGGTGTTTGCTCAGTTCGCTGACCCGAAAGTGC
TTCATGTCCCTGCCTGACCCTCACTGGGGACGGCCAGTCGTGTATTACGTTGCGCTTCTT
TGCTTCGTGCGGGTGGGACCAGGAGGAAGAGGACACCGCCTCCAGCCCAGGTCCTAAGTC
TGGGCTGCCAGGTCTTCTCACCCCACCTCGGAGACCAGACAAACCCCACTGACCTGCTGT
GGCCTCTGAGATGCGCTCCACTTTGAACCGCTTCTTGGAATTGGCTCTCTCCTTCAAAGG
ACCAGGTCCTGTTCTTTGTCCCCCTTGCCACCCAGCTCCCGGCGAAGAGAGAGTTAATAT
ATATTTTTTATTTATTTGCTTTTTGCGTTGGGATGGGTTCCTCGCCAGTCCCGGGGGTCT
GATGTGGCCGTCACAGGTTGGGTAATGTACCCAGCAGTCCTGGCGAGGGGGCCTGCGGCC
CTTCTCCTTGCCCCGGGCTGTATCTCCCCACCTCCCCCTCTCTCCCGTTTTCGCCAACCG
CTATTCATTGAGTCACCATTTAAGCTAAGCATGGATACCAGACTTGTCACTGACTTTCCT
CTGGAGCAGGTGGCTAGAAAAAGAGGTTACGAGCAGAAAAAACGTTCCCGTGTCTCATTT
GTAAGGCTGGCCTCTGGCTTTTCTGCCATGGATCCTTCGCCTGGCCTCTCCCCCCAGCAA
TTCCTGCAAAGGATTAAAAATGTAACTGGTTTTTACTACTGATGACTTGACTTAAAAAAA
ATACAAAGATGCTGGATGCTAACTTGATGCTAACCATTTGATTGTACAGTTTGATTGTTA
CTGTAAATACATAGAGTTTGGTGTTTGGTTTTCTCATTTTCCCATACTAGTGAATAAACT
AGTTCTGTGCGG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-116, - strand, RNAz p=0.574524
               

               
               5-97, - strand, RNAz p=0.812718
               

               
               216-606, - strand, RNAz p=0.994553

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, - strand, RNAz p=0.574524
               

               
               5-97, - strand, RNAz p=0.812718
               

               
               216-606, - strand, RNAz p=0.994553

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               374-488, - strand, RNAmicro p=0.982179

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               374-488, - strand, RNAmicro p=0.982179

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-214, gnl|bosTau2|chr3 (30505226-30505011)
               

               
               1-214, gnl|canFam2|chr6 (45607872-45607533)
               

               
               1-214, gnl|dasNov1|scaffold_148907 (643-990)
               

               
               1-214, gnl|hg17|chr1 (109529319-109529659)
               

               
               1-214, gnl|Hg17|chr1 (109529390-109529607)
               

               
               1-214, gnl|mm7|chr3 (108210285-108209951)
               

               
               1-214, gnl|Mm7|chr3 (108210212-108210001)
               

               
               1-214, gnl|monDom2|scaffold_0 (7369249-7368926)
               

               
               1-214, gnl|oryCun1|scaffold_170765 (7406-7046)
               

               
               1-214, gnl|panTro1|chr1 (108454606-108454946)
               

               
               1-214, gnl|rheMac2|chr1 (112330424-112330759)
               

               
               1-214, gnl|rn3|chr2 (203922931-203922594)
               


               
               216-972, gnl|bosTau2|chr3 (30504986-30504229)
               

               
               216-972, gnl|Hg17|chr1 (109529635-109530412)
               

               
               216-972, gnl|Mm7|chr3 (108209973-108209167)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-214, gnl|bosTau2|chr3 (30505226-30505011)
               

               
               1-214, gnl|canFam2|chr6 (45607872-45607533)
               

               
               1-214, gnl|dasNov1|scaffold_148907 (643-990)
               

               
               1-214, gnl|hg17|chr1 (109529319-109529659)
               

               
               1-214, gnl|Hg17|chr1 (109529390-109529607)
               

               
               1-214, gnl|mm7|chr3 (108210285-108209951)
               

               
               1-214, gnl|Mm7|chr3 (108210212-108210001)
               

               
               1-214, gnl|monDom2|scaffold_0 (7369249-7368926)
               

               
               1-214, gnl|oryCun1|scaffold_170765 (7406-7046)
               

               
               1-214, gnl|panTro1|chr1 (108454606-108454946)
               

               
               1-214, gnl|rheMac2|chr1 (112330424-112330759)
               

               
               1-214, gnl|rn3|chr2 (203922931-203922594)
               


               
               216-972, gnl|bosTau2|chr3 (30504986-30504229)
               

               
               216-972, gnl|Hg17|chr1 (109529635-109530412)
               

               
               216-972, gnl|Mm7|chr3 (108209973-108209167)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbr (3.45534)
               

               
               fcc (0.593354)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (3.45534)
               

               
               fcc (0.593354)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               pgl (0.118483)

	1-116, - strand, RNAz p=0.574524
	5-97, - strand, RNAz p=0.812718
	216-606, - strand, RNAz p=0.994553

	1-214, gnl\|bosTau2\|chr3 (30505226-30505011)
	1-214, gnl\|canFam2\|chr6 (45607872-45607533)
	1-214, gnl\|dasNov1\|scaffold_148907 (643-990)
	1-214, gnl\|hg17\|chr1 (109529319-109529659)
	1-214, gnl\|Hg17\|chr1 (109529390-109529607)
	1-214, gnl\|mm7\|chr3 (108210285-108209951)
	1-214, gnl\|Mm7\|chr3 (108210212-108210001)
	1-214, gnl\|monDom2\|scaffold_0 (7369249-7368926)
	1-214, gnl\|oryCun1\|scaffold_170765 (7406-7046)
	1-214, gnl\|panTro1\|chr1 (108454606-108454946)
	1-214, gnl\|rheMac2\|chr1 (112330424-112330759)
	1-214, gnl\|rn3\|chr2 (203922931-203922594)

	216-972, gnl\|bosTau2\|chr3 (30504986-30504229)
	216-972, gnl\|Hg17\|chr1 (109529635-109530412)
	216-972, gnl\|Mm7\|chr3 (108209973-108209167)

	cbr (3.45534)
	fcc (0.593354)
	cmu (0.186393)
	cut (0.169924)
	pgl (0.118483)