Non-Coding RNA Search

Ss1.1-rcbr0_012068.5

Sequence:


               
               CGGGGCATGACCCGGGCCATGACCATGCCCCCGGTATCACCGGTCGGGGCTGAGGGACCT
GTCGTACTTCGCAGCAAGGACGGCAGGGAACGAGAGCGAGAAAAGCGCTTCAGCTTCTTC
AAGAAGAACAAGTAGTAGAGGCGAGACTCCCGGCCAACTCCCTCCCTCTGTCCAGGAAAC
TGCCAGGGACGTCGACAGGGACCACCCTCTTGTTGGGACAACTGCCTGCTGCTAGGGTCT
GTTGCCAAGGTCAACCCATCACCAGGAACTGTCTCTGGGGACAAGTCCGTGTTCCCAAGG
GCAGCCCTTTTCTTCCGCTATTTAATTCCAGACTGGTGGTGGGACCCAGGCAACCCCCGA
TTCCACTCCCTCCGTGCCCCCCTCTCCCCCAGCCTTACGCCTCCACCCCCACCACAGCGC
GCACAGCGCTGCGCCCTCAACGTAGGCCATGCGGGGAATGGCTGGCCGGGGGGTGAGGGC
CATCCTCCCGCCACAGGTAGGGCACGCCATCCATTCCTTGCCCCTGGGGACCAGCCAGGA
ACCTCAAAGAGCTGAAGCAGGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGCATGACCCGGGCCATGACCATGCCCCCGGTATCACCGGTCGGGGCTGAGGGACCT
GTCGTACTTCGCAGCAAGGACGGCAGGGAACGAGAGCGAGAAAAGCGCTTCAGCTTCTTC
AAGAAGAACAAGTAGTAGAGGCGAGACTCCCGGCCAACTCCCTCCCTCTGTCCAGGAAAC
TGCCAGGGACGTCGACAGGGACCACCCTCTTGTTGGGACAACTGCCTGCTGCTAGGGTCT
GTTGCCAAGGTCAACCCATCACCAGGAACTGTCTCTGGGGACAAGTCCGTGTTCCCAAGG
GCAGCCCTTTTCTTCCGCTATTTAATTCCAGACTGGTGGTGGGACCCAGGCAACCCCCGA
TTCCACTCCCTCCGTGCCCCCCTCTCCCCCAGCCTTACGCCTCCACCCCCACCACAGCGC
GCACAGCGCTGCGCCCTCAACGTAGGCCATGCGGGGAATGGCTGGCCGGGGGGTGAGGGC
CATCCTCCCGCCACAGGTAGGGCACGCCATCCATTCCTTGCCCCTGGGGACCAGCCAGGA
ACCTCAAAGAGCTGAAGCAGGACC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               197-356, - strand, RNAz p=0.997386
               

               
               394-505, - strand, RNAz p=0.625195

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-356, - strand, RNAz p=0.997386
               

               
               394-505, - strand, RNAz p=0.625195

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               431-544, - strand, RNAmicro p=0.984888

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               431-544, - strand, RNAmicro p=0.984888

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               197-356, BX110027 Soares adult brain N2b5HB55Y Homo sapiens cDNA clone 
(emb|BX110027.1|), blast E-value=0, identity=93.75% 
               

               
               197-356, UI-E-CL1-afg-d-17-0-UI.r1 UI-E-CL1 Homo sapiens cDNA clone 
(gb|BM702489.1|), blast E-value=0, identity=93.75% 
               

               
               197-356, K-EST0082828 S22SNU16n1 Homo sapiens cDNA clone S22SNU16n1-59-F08 
(gb|BM799041.1|), blast E-value=0, identity=93.75% 
               

               
               197-356, UI-H-FL0-bdo-h-20-0-UI.s1 NCI_CGAP_FL0 Homo sapiens cDNA clone 
(gb|BU631358.1|), blast E-value=0, identity=93.75% 
               

               
               197-356, UI-CF-FN0-aez-a-12-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CA314132.1|), blast E-value=0, identity=93.75% 
               

               
               197-356, 56053214J1 FLP Homo sapiens cDNA, mRNA sequence (gb|CD623489.1|), blast 
E-value=0, identity=93.75%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               197-356, BX110027 Soares adult brain N2b5HB55Y Homo sapiens cDNA clone 
(emb|BX110027.1|), blast E-value=0, identity=93.75% 
               

               
               197-356, UI-E-CL1-afg-d-17-0-UI.r1 UI-E-CL1 Homo sapiens cDNA clone 
(gb|BM702489.1|), blast E-value=0, identity=93.75% 
               

               
               197-356, K-EST0082828 S22SNU16n1 Homo sapiens cDNA clone S22SNU16n1-59-F08 
(gb|BM799041.1|), blast E-value=0, identity=93.75% 
               

               
               197-356, UI-H-FL0-bdo-h-20-0-UI.s1 NCI_CGAP_FL0 Homo sapiens cDNA clone 
(gb|BU631358.1|), blast E-value=0, identity=93.75% 
               

               
               197-356, UI-CF-FN0-aez-a-12-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CA314132.1|), blast E-value=0, identity=93.75% 
               

               
               197-356, 56053214J1 FLP Homo sapiens cDNA, mRNA sequence (gb|CD623489.1|), blast 
E-value=0, identity=93.75%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-564, gnl|bosTau2|chr29 (36823675-36824237)
               

               
               1-564, gnl|Hg17|chr11 (66210052-66209478)
               

               
               1-564, gnl|Mm7|chr19 (4646406-4646972)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr29 (36823675-36824237)
               

               
               1-564, gnl|Hg17|chr11 (66210052-66209478)
               

               
               1-564, gnl|Mm7|chr19 (4646406-4646972)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               cbr (0.127975)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cbr (0.127975)

	197-356, - strand, RNAz p=0.997386
	394-505, - strand, RNAz p=0.625195

	197-356, BX110027 Soares adult brain N2b5HB55Y Homo sapiens cDNA clone (emb\|BX110027.1\|), blast E-value=0, identity=93.75%
	197-356, UI-E-CL1-afg-d-17-0-UI.r1 UI-E-CL1 Homo sapiens cDNA clone (gb\|BM702489.1\|), blast E-value=0, identity=93.75%
	197-356, K-EST0082828 S22SNU16n1 Homo sapiens cDNA clone S22SNU16n1-59-F08 (gb\|BM799041.1\|), blast E-value=0, identity=93.75%
	197-356, UI-H-FL0-bdo-h-20-0-UI.s1 NCI_CGAP_FL0 Homo sapiens cDNA clone (gb\|BU631358.1\|), blast E-value=0, identity=93.75%
	197-356, UI-CF-FN0-aez-a-12-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone (gb\|CA314132.1\|), blast E-value=0, identity=93.75%
	197-356, 56053214J1 FLP Homo sapiens cDNA, mRNA sequence (gb\|CD623489.1\|), blast E-value=0, identity=93.75%

	1-564, gnl\|bosTau2\|chr29 (36823675-36824237)
	1-564, gnl\|Hg17\|chr11 (66210052-66209478)
	1-564, gnl\|Mm7\|chr19 (4646406-4646972)