Non-Coding RNA Search

Ss1.1-rcbr0_012163.5

Sequence:


               
               AGATGCAGACAGTGTTTTTGAACATGAGTTAGGGGCTCTCAACATGGCAGCATTACTACG
AAAAGAGGAAAGAGCAAGTCTTCTTAGTGATCTTGGACCATGTTGTAAAGCATTATGCTT
CAGACGGGATTCTGCAATCCGAAAGCAGCTAGTTAAAAATGAGAAGGGCACTATAAAACA
AGCTTATACAAATGCTCCACTGGTAGACAATGAGTTGTTAAGATTGAGTCTTCGATTATT
TAAGCGGAAGACTACGTGCCATACTCCAGGACCTGAGAAGACTGAAGATAATAAACTCGC
ACAGTCCAGCATCCAGCAGGAGCTCTGTGTGTCTTAAGACTGAAGTCCAGTGACAGCTGT
GGTACTCTCTTCCTTCTGCAGCGTGTATCCTTTCTCAGAGTTCTTTGGTTGGACAGGTGT
TATTAGTGACAAAAGGTAGAAAAGACTTAACAGCCGTGCTAGAAGAGTGACCAACTGGGA
AGTTTAAAGACACTAATTTCGACAAACTTAAGATTTTCATAAGTTTTTACACAGTACTTG
ACACTCATGCAAAATAATGTGAAAGCATCTAGATTTAGTAGTTTGTTCGGTACCTTTTGT
TAAAACTGAAGATTTTGAAAATGGTCATCCCTGCTCTGCCGGCCTATGCAGATTTTCTTA
TGAACTGGAGCCACTGACTTACCTACCAGACGTCTCTACAGAAACTGCAGTTTTCTTCAG
AAACAGGGTGTTCACCAAACAAACGCACAAGCTGTGTGGCACCGCCCTGCCCAAGACAGA
GGCAGGTGCTGTGCGTCGGTAGAGCTCCCGAAGGAGTAAGCCACAGGCCTGTTTTCCTTT
CTAAAGTTCTAACAAAACTACTTGAGGGCTCTTTGGATTCTGTTTTTTTTTAAATATGTG
TGTGTTGTTACAGTGTATATTGGATATATTTTGATTCTAAATGGTTTTGTTATCAGAGAC
TGTCTACTAGTTTTATTTTTTAATAAATGTACCTTCCCGTTCCTTGTTCTAGATTTACTT
TGCTCTTCATCAGTCTTATTCCTGATGTACTGAAACACTGGTCACTCATGTTACATGCTT
TGTACTTGACATATTTTACTGCTCAAGTTCTTGTTACTGGACAGCTGTAAATAACGTGTT
AAGAGCTGAGGACGTACTTCAAATACAGCTCAGTCGTACTTGAAACAGGCCAGGAGTTAA
CAAACCTATGTAATCTGAGCTTCAAAATCCTCCTGTCATACTTTTCAGAGCTATAACCTT
GAATTACATTTAACCTTCCTCCAGCCTATAATATGTAAAACAATTTGCTTTTTAAAAATT
ACAGTACAGCTGATTTTATATGTACATATTTAACTCATGAAGTGGACTCTTAAAGGGATT
TGAAATGGATTCCAAATCACAGAATTTGTGGGCAGACAGTAATAATAATGAAGGAAACCA
GTCAAAATTGTAATTTAATGATTGCCTCGCACCGGTTTTTGTCAAAACTAATCCTATGTT
TCCTCTTTCTTTAGTTTTGTATCCTCTTCTCTGCAGGTAATGTTACTAGTTGAAAGTTTA
TGTTCATTTCAAGAAACAGTCATTGTGCACTTAATTTGTACAGAATACTTACCCAGCAAA
GGAAAAACGCTTATTTTCAGATGTCAGTGAAAGCATGTGTAAGAAAACTGCAAGTAGCAA
AATAAAAAAAGTAAAAGTTTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGCAGACAGTGTTTTTGAACATGAGTTAGGGGCTCTCAACATGGCAGCATTACTACG
AAAAGAGGAAAGAGCAAGTCTTCTTAGTGATCTTGGACCATGTTGTAAAGCATTATGCTT
CAGACGGGATTCTGCAATCCGAAAGCAGCTAGTTAAAAATGAGAAGGGCACTATAAAACA
AGCTTATACAAATGCTCCACTGGTAGACAATGAGTTGTTAAGATTGAGTCTTCGATTATT
TAAGCGGAAGACTACGTGCCATACTCCAGGACCTGAGAAGACTGAAGATAATAAACTCGC
ACAGTCCAGCATCCAGCAGGAGCTCTGTGTGTCTTAAGACTGAAGTCCAGTGACAGCTGT
GGTACTCTCTTCCTTCTGCAGCGTGTATCCTTTCTCAGAGTTCTTTGGTTGGACAGGTGT
TATTAGTGACAAAAGGTAGAAAAGACTTAACAGCCGTGCTAGAAGAGTGACCAACTGGGA
AGTTTAAAGACACTAATTTCGACAAACTTAAGATTTTCATAAGTTTTTACACAGTACTTG
ACACTCATGCAAAATAATGTGAAAGCATCTAGATTTAGTAGTTTGTTCGGTACCTTTTGT
TAAAACTGAAGATTTTGAAAATGGTCATCCCTGCTCTGCCGGCCTATGCAGATTTTCTTA
TGAACTGGAGCCACTGACTTACCTACCAGACGTCTCTACAGAAACTGCAGTTTTCTTCAG
AAACAGGGTGTTCACCAAACAAACGCACAAGCTGTGTGGCACCGCCCTGCCCAAGACAGA
GGCAGGTGCTGTGCGTCGGTAGAGCTCCCGAAGGAGTAAGCCACAGGCCTGTTTTCCTTT
CTAAAGTTCTAACAAAACTACTTGAGGGCTCTTTGGATTCTGTTTTTTTTTAAATATGTG
TGTGTTGTTACAGTGTATATTGGATATATTTTGATTCTAAATGGTTTTGTTATCAGAGAC
TGTCTACTAGTTTTATTTTTTAATAAATGTACCTTCCCGTTCCTTGTTCTAGATTTACTT
TGCTCTTCATCAGTCTTATTCCTGATGTACTGAAACACTGGTCACTCATGTTACATGCTT
TGTACTTGACATATTTTACTGCTCAAGTTCTTGTTACTGGACAGCTGTAAATAACGTGTT
AAGAGCTGAGGACGTACTTCAAATACAGCTCAGTCGTACTTGAAACAGGCCAGGAGTTAA
CAAACCTATGTAATCTGAGCTTCAAAATCCTCCTGTCATACTTTTCAGAGCTATAACCTT
GAATTACATTTAACCTTCCTCCAGCCTATAATATGTAAAACAATTTGCTTTTTAAAAATT
ACAGTACAGCTGATTTTATATGTACATATTTAACTCATGAAGTGGACTCTTAAAGGGATT
TGAAATGGATTCCAAATCACAGAATTTGTGGGCAGACAGTAATAATAATGAAGGAAACCA
GTCAAAATTGTAATTTAATGATTGCCTCGCACCGGTTTTTGTCAAAACTAATCCTATGTT
TCCTCTTTCTTTAGTTTTGTATCCTCTTCTCTGCAGGTAATGTTACTAGTTGAAAGTTTA
TGTTCATTTCAAGAAACAGTCATTGTGCACTTAATTTGTACAGAATACTTACCCAGCAAA
GGAAAAACGCTTATTTTCAGATGTCAGTGAAAGCATGTGTAAGAAAACTGCAAGTAGCAA
AATAAAAAAAGTAAAAGTTTTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61832064|ref|XP_584421.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61832064|ref|XP_584421.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               165-1192, gnl|bosTau2|chr12 (6497235-6496220)
               

               
               165-1192, gnl|Hg17|chr13 (45429435-45428315)
               

               
               165-1192, gnl|Mm7|chr14 (70024229-70025250)
               


               
               1237-1688, gnl|bosTau2|chr12 (6496221-6495759)
               

               
               1237-1688, gnl|Hg17|chr13 (45428316-45427874)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-1192, gnl|bosTau2|chr12 (6497235-6496220)
               

               
               165-1192, gnl|Hg17|chr13 (45429435-45428315)
               

               
               165-1192, gnl|Mm7|chr14 (70024229-70025250)
               


               
               1237-1688, gnl|bosTau2|chr12 (6496221-6495759)
               

               
               1237-1688, gnl|Hg17|chr13 (45428316-45427874)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               cbr (4.22319)
               

               
               gul (0.355177)
               

               
               pla (0.267344)
               

               
               med (0.232504)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (4.22319)
               

               
               gul (0.355177)
               

               
               pla (0.267344)
               

               
               med (0.232504)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	165-1192, gnl\|bosTau2\|chr12 (6497235-6496220)
	165-1192, gnl\|Hg17\|chr13 (45429435-45428315)
	165-1192, gnl\|Mm7\|chr14 (70024229-70025250)

	1237-1688, gnl\|bosTau2\|chr12 (6496221-6495759)
	1237-1688, gnl\|Hg17\|chr13 (45428316-45427874)

	cbr (4.22319)
	gul (0.355177)
	pla (0.267344)
	med (0.232504)
	fcc (0.197785)
	sag (0.182715)
	fty (0.17584)
	rec (0.17307)
	isp (0.150376)
	ski (0.146735)
	lin (0.145603)
	csk (0.140746)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	spc (0.113366)
	ldo (0.0970026)