Ss1.1-rcbr0_013419.5
|
AGGAATTCGAATTTGATCAGAAGGCCTTTCTTACAGTTATCTATTCCTATAGCAAAAGAT
TAAAATTAGATTGATTTAGGTTAACAATTCTAGACTAAATTGTAAAGGCTTTGCCAGTAC
CCTCCAACATCAGGTGAGTCATTTAATAATGGTTTATTTGTTGGCAGAATGGTAAAATGA
AGTGCTGCAACATAGGAAATAATGTAACTATATAGCCCTACCCTCTGGCAGTTTAGTGTG
AGAATGTGGATGATTTTGTTCATACTGCAAAATTTATAATTCAAAAATCTCCAAATACCT
TTTTTTTTAAGAGACTATATATTTGTGCTGATAGCTATATTAGAAATAACAAATACTGAA
CAAAGCTGAAAGGCTATATACACCTTTTAGGGTGGTTGGCCAAAAAGTAAGTTTGAATTT
GTTTGTTTTCAGTAGTCTTGGTGCTGACTGCTGTCAGGTAGTAATAGAGATGCTAGTCTT
CACAGGTTTCCTGGGACTCCTAACTGAGTAGTGAATGTCCAGTAATTCAGGGAACTTTAG
AGGACTTCAAACTGTAAGGTCTGTTCATGTGTAAATAAACATACACCAAAAAATCCTCAA
GATTTAATTAATGGTTAACCTAGAGGAAGCCACATAACCAAAAAGCACAGTGACTGTAAT
CCAGGTCCTTTCGTGAGGGTCATCATGGGTTTATTGCTAGAAAGATTCAGCAGGTAGTTT
TAGATTTAACTTTGGCTCACCAACCTTTCTAACACTTAATTTCAGTGATGGCTAGAAGTA
GGCCTGAATGTCTTCCCAGAGAGTCTGGCACTTAGGTTTTTTTGCAAGGAGAGGAGAGGT
CTTCCTTGAGATTTCATTTAAATCCTGATGATTAAAGTGAGACTTTAATTGGTGTTAATG
CCTTATCTCTAAAGTGTAAAATGGGAATTTTCCTGGGGCAGGGTAAGGAGTGGCATTTTT
AGGACTAATACATTGAAAACTGATTCAGCCTCTAGTAATTGAACAGTTTTCAATAGCATG
ATTAGTCAAATTCATTATGACTTTTAACTTATAAGAAGCTTTTGGGATAGGTTGGAGTAT
TTATTACATATTTTACTGTTTAATGTCTAACGTGGGCCTTTTAATTTGTAAACATTTACT
GAAATGACTGTGGGACTGTGGAAAACATTTACCTATTTACCTTTGAAGTTTTAAAAGACA
GTCCACTTTTTAGCATGTGTGTTGTGTCCAGCCTGTGGTTGTCTTAACCTAATAAATGTG
ATTTTTCTCCCAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGAATTCGAATTTGATCAGAAGGCCTTTCTTACAGTTATCTATTCCTATAGCAAAAGAT
TAAAATTAGATTGATTTAGGTTAACAATTCTAGACTAAATTGTAAAGGCTTTGCCAGTAC
CCTCCAACATCAGGTGAGTCATTTAATAATGGTTTATTTGTTGGCAGAATGGTAAAATGA
AGTGCTGCAACATAGGAAATAATGTAACTATATAGCCCTACCCTCTGGCAGTTTAGTGTG
AGAATGTGGATGATTTTGTTCATACTGCAAAATTTATAATTCAAAAATCTCCAAATACCT
TTTTTTTTAAGAGACTATATATTTGTGCTGATAGCTATATTAGAAATAACAAATACTGAA
CAAAGCTGAAAGGCTATATACACCTTTTAGGGTGGTTGGCCAAAAAGTAAGTTTGAATTT
GTTTGTTTTCAGTAGTCTTGGTGCTGACTGCTGTCAGGTAGTAATAGAGATGCTAGTCTT
CACAGGTTTCCTGGGACTCCTAACTGAGTAGTGAATGTCCAGTAATTCAGGGAACTTTAG
AGGACTTCAAACTGTAAGGTCTGTTCATGTGTAAATAAACATACACCAAAAAATCCTCAA
GATTTAATTAATGGTTAACCTAGAGGAAGCCACATAACCAAAAAGCACAGTGACTGTAAT
CCAGGTCCTTTCGTGAGGGTCATCATGGGTTTATTGCTAGAAAGATTCAGCAGGTAGTTT
TAGATTTAACTTTGGCTCACCAACCTTTCTAACACTTAATTTCAGTGATGGCTAGAAGTA
GGCCTGAATGTCTTCCCAGAGAGTCTGGCACTTAGGTTTTTTTGCAAGGAGAGGAGAGGT
CTTCCTTGAGATTTCATTTAAATCCTGATGATTAAAGTGAGACTTTAATTGGTGTTAATG
CCTTATCTCTAAAGTGTAAAATGGGAATTTTCCTGGGGCAGGGTAAGGAGTGGCATTTTT
AGGACTAATACATTGAAAACTGATTCAGCCTCTAGTAATTGAACAGTTTTCAATAGCATG
ATTAGTCAAATTCATTATGACTTTTAACTTATAAGAAGCTTTTGGGATAGGTTGGAGTAT
TTATTACATATTTTACTGTTTAATGTCTAACGTGGGCCTTTTAATTTGTAAACATTTACT
GAAATGACTGTGGGACTGTGGAAAACATTTACCTATTTACCTTTGAAGTTTTAAAAGACA
GTCCACTTTTTAGCATGTGTGTTGTGTCCAGCCTGTGGTTGTCTTAACCTAATAAATGTG
ATTTTTCTCCCAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1006-1072, + strand, RNAmicro p=0.976595 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
1006-1072, + strand, RNAmicro p=0.976595 |
|
821-1271, gnl|bosTau2|chr19 (42622213-42621790) |
|
821-1271, gnl|canFam2|chr9 (15427175-15427709) |
|
821-1271, gnl|dasNov1|scaffold_39796 (3896-4325) |
|
821-1271, gnl|echTel1|scaffold_303041 (838-1277) |
|
821-1271, gnl|hg17|chr17 (59924830-59925351) |
|
821-1271, gnl|Hg17|chr17 (59925310-59924836) |
|
821-1271, gnl|loxAfr1|scaffold_7204 (55889-55386) |
|
821-1271, gnl|mm7|chr11 (106889392-106889888) |
|
821-1271, gnl|Mm7|chr11 (106889862-106889398) |
|
821-1271, gnl|oryCun1|scaffold_190989 (81180-80732) |
|
821-1271, gnl|panTro1|chr19_random (49345722-49346243) |
|
821-1271, gnl|rheMac2|chr16 (60043700-60044218) |
|
821-1271, gnl|rn3|chr10 (96145087-96145577) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
821-1271, gnl|bosTau2|chr19 (42622213-42621790) |
|
821-1271, gnl|canFam2|chr9 (15427175-15427709) |
|
821-1271, gnl|dasNov1|scaffold_39796 (3896-4325) |
|
821-1271, gnl|echTel1|scaffold_303041 (838-1277) |
|
821-1271, gnl|hg17|chr17 (59924830-59925351) |
|
821-1271, gnl|Hg17|chr17 (59925310-59924836) |
|
821-1271, gnl|loxAfr1|scaffold_7204 (55889-55386) |
|
821-1271, gnl|mm7|chr11 (106889392-106889888) |
|
821-1271, gnl|Mm7|chr11 (106889862-106889398) |
|
821-1271, gnl|oryCun1|scaffold_190989 (81180-80732) |
|
821-1271, gnl|panTro1|chr19_random (49345722-49346243) |
|
821-1271, gnl|rheMac2|chr16 (60043700-60044218) |
|
821-1271, gnl|rn3|chr10 (96145087-96145577) |
|
cbr (5.63092) |
|
ret (0.514933) |
|
pro (0.512033) |
|
mgp (0.461361) |
|
spc (0.453463) |
|
spl (0.286369) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ova (0.258264) |
|
tra (0.246184) |
|
ece (0.229305) |
|
aor (0.195274) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
fat (0.147427) |
|
ski (0.146735) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
cbr (5.63092) |
|
ret (0.514933) |
|
pro (0.512033) |
|
mgp (0.461361) |
|
spc (0.453463) |
|
spl (0.286369) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ova (0.258264) |
|
tra (0.246184) |
|
ece (0.229305) |
|
aor (0.195274) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
fat (0.147427) |
|
ski (0.146735) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
