Non-Coding RNA Search

Ss1.1-rcbr0_013443.5

Sequence:


               
               TCCACTTCTAATGGTGAAATTCTCATACAACCTCAAAGGCCCACCTCTACTTCCCTTTCT
CTGCAAATCCCACACTCCAGTTATATCTTCCCCTGGAACACTTCCCTGGGACTAGTAGTC
TTGGCTGTATCTGGCTGGGAACTTTCCAATTTTGTGTGTCTGATGTCCAGAGGGAAAATG
AGGATGTTTAGAACAGGGAAATAAGTGGAAGAGGAAGTCTGAAGTCCGCTTGAATTCCTC
AGTGATAAGGGCTAGAGGGAGCTGCCCTGGCCCTGTCCTTCAAAGGGCAGTGGTTGACCA
GATGGCCCAAGGCAAGGTCATGGATAGGGATTGATGCTCTCCAGATCGGTGGTCAGAGAC
TTAAGTCCCTCTGGGAATGTACATTTGCTGAGTGACCTCAGGTCCCTCCTTGGTCTCTAT
TTCCTCTACCCTTCTCCAGATGGTGTCCAGCACTCAACTAAATGGTGATGAAGACAGAAC
TCATTTTCCAGACCATTTCCACTTTATTCAGAGATACCCCAGGCTCCCAGGTTACCACAG
GGGCTCCTGCCCTTCCTCTGAACATTGAATGCCTCTCAAGAGAGACTCAGTAGCTGTCCT
GCTGAGGTAGCAGAGGTGATTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCACTTCTAATGGTGAAATTCTCATACAACCTCAAAGGCCCACCTCTACTTCCCTTTCT
CTGCAAATCCCACACTCCAGTTATATCTTCCCCTGGAACACTTCCCTGGGACTAGTAGTC
TTGGCTGTATCTGGCTGGGAACTTTCCAATTTTGTGTGTCTGATGTCCAGAGGGAAAATG
AGGATGTTTAGAACAGGGAAATAAGTGGAAGAGGAAGTCTGAAGTCCGCTTGAATTCCTC
AGTGATAAGGGCTAGAGGGAGCTGCCCTGGCCCTGTCCTTCAAAGGGCAGTGGTTGACCA
GATGGCCCAAGGCAAGGTCATGGATAGGGATTGATGCTCTCCAGATCGGTGGTCAGAGAC
TTAAGTCCCTCTGGGAATGTACATTTGCTGAGTGACCTCAGGTCCCTCCTTGGTCTCTAT
TTCCTCTACCCTTCTCCAGATGGTGTCCAGCACTCAACTAAATGGTGATGAAGACAGAAC
TCATTTTCCAGACCATTTCCACTTTATTCAGAGATACCCCAGGCTCCCAGGTTACCACAG
GGGCTCCTGCCCTTCCTCTGAACATTGAATGCCTCTCAAGAGAGACTCAGTAGCTGTCCT
GCTGAGGTAGCAGAGGTGATTAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-143, - strand, RNAz p=0.621201

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-143, - strand, RNAz p=0.621201

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-622, gnl|bosTau2|chr22 (7542779-7543364)
               

               
               1-622, gnl|Hg17|chr3 (42526728-42527358)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-622, gnl|bosTau2|chr22 (7542779-7543364)
               

               
               1-622, gnl|Hg17|chr3 (42526728-42527358)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbr (1.27975)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.27975)

	1-622, gnl\|bosTau2\|chr22 (7542779-7543364)
	1-622, gnl\|Hg17\|chr3 (42526728-42527358)