Non-Coding RNA Search

Ss1.1-rcbr0_013558.5

Sequence:


               
               GATTCGAATTCTCAGGTTTATCATATTTCTTCTACGTTTCAACTGTTAAATTTAAAGAGT
TATTATTAGTCCTTAAGTTTTTATCATCAGATCAGATATCTGAAGTACTTGAAACAGAAA
TCAAATATATAAAATGCATAAATCATTTTCAAATGCAATGAAGATGATTCAACGAGATTA
TAAATGGAACCAAATGTTATTCACAGACCCATAAAAACAACTGCTAAACTCTGCTAGATT
TATATACACAACGATCAATATCACTGGCCTAAAGAAGAACTAATCTAGGATTTTTTTTAG
TCAAAAATAATGTAGTATTATTTAAACCAAAGTTGAGGTCTTGATACTTATTTCGAAGCA
TTTTAAAGACGGCCCCTGTGGGCATTATAAAACTCACATCAACAATTATCTCCCCAGAGA
GGTTACAGACAACCCTCTTCCTATAGCAGTATATGAATGTGCCTGTGTCTAGCCTCCTTG
CCAGCACTCCGTGATTCTACCATTTAAACTTCTGCCGATGTGACTGAAGAAAGACTAGAT
GTCATTATTGCTTTGATTTGCATTTATGCCTGTCTTACTACGGAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCGAATTCTCAGGTTTATCATATTTCTTCTACGTTTCAACTGTTAAATTTAAAGAGT
TATTATTAGTCCTTAAGTTTTTATCATCAGATCAGATATCTGAAGTACTTGAAACAGAAA
TCAAATATATAAAATGCATAAATCATTTTCAAATGCAATGAAGATGATTCAACGAGATTA
TAAATGGAACCAAATGTTATTCACAGACCCATAAAAACAACTGCTAAACTCTGCTAGATT
TATATACACAACGATCAATATCACTGGCCTAAAGAAGAACTAATCTAGGATTTTTTTTAG
TCAAAAATAATGTAGTATTATTTAAACCAAAGTTGAGGTCTTGATACTTATTTCGAAGCA
TTTTAAAGACGGCCCCTGTGGGCATTATAAAACTCACATCAACAATTATCTCCCCAGAGA
GGTTACAGACAACCCTCTTCCTATAGCAGTATATGAATGTGCCTGTGTCTAGCCTCCTTG
CCAGCACTCCGTGATTCTACCATTTAAACTTCTGCCGATGTGACTGAAGAAAGACTAGAT
GTCATTATTGCTTTGATTTGCATTTATGCCTGTCTTACTACGGAAGCT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-416, gnl|bosTau2|chr9 (59040988-59040593)
               

               
               6-416, gnl|Hg17|chr6 (160394209-160393047)
               


               
               456-588, gnl|bosTau2|chr9 (59040210-59040078)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-416, gnl|bosTau2|chr9 (59040988-59040593)
               

               
               6-416, gnl|Hg17|chr6 (160394209-160393047)
               


               
               456-588, gnl|bosTau2|chr9 (59040210-59040078)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbr (2.55951)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.55951)
               

               
               ecc (0.115035)

	6-416, gnl\|bosTau2\|chr9 (59040988-59040593)
	6-416, gnl\|Hg17\|chr6 (160394209-160393047)

	456-588, gnl\|bosTau2\|chr9 (59040210-59040078)