Non-Coding RNA Search

Ss1.1-rcbr0_013717.5

Sequence:


               
               AAGATGTGCCCGAGTGACGTGTACCGCGTGTGGAAGCGGGGTGAGAGCCTGCGGGTGGAC
ACCAGCCTCCTGGGCTTCGAGCACATGACCTGGCAGCGCGGCCGAAGGAGCTTCATCTTC
AAGGGCCAGGAGGCGGGAGCCTTGGTGATGGAAGTTGACCATGACCGACAAGTGGTGCAC
ACGGAGACGCTGGGGCTGGCGCTGCACGAGCCGGAAGCGCTGCTGGCTGCCATGCGGCCC
AGCGAGGAGCACGTGGCCAGTCGCCTCACCTCTCCCATCGTCTCCACCCACCTGGACACT
CGCAATGTGGCCTTCGAGAGGAACAAATGTGGTATCTGGGGCTGGCGGTCTGAGAAGATG
GAAACCGTTAGCGGCTACGAGGCCAAGGTGTACAGTGCCACCAATGTGGAGCTGGTGACA
CGCACACGCACGGAGCACCTCTCAGATCAGGACAAGTCGAGGAGCAAAGGGGGGAAGACG
CCATTCCAGTCCTTCCTTGGGATGGCCCAGCAGCACTCCTCCCACAATGGGGCTCCCGTG
CAGCAGGCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATGTGCCCGAGTGACGTGTACCGCGTGTGGAAGCGGGGTGAGAGCCTGCGGGTGGAC
ACCAGCCTCCTGGGCTTCGAGCACATGACCTGGCAGCGCGGCCGAAGGAGCTTCATCTTC
AAGGGCCAGGAGGCGGGAGCCTTGGTGATGGAAGTTGACCATGACCGACAAGTGGTGCAC
ACGGAGACGCTGGGGCTGGCGCTGCACGAGCCGGAAGCGCTGCTGGCTGCCATGCGGCCC
AGCGAGGAGCACGTGGCCAGTCGCCTCACCTCTCCCATCGTCTCCACCCACCTGGACACT
CGCAATGTGGCCTTCGAGAGGAACAAATGTGGTATCTGGGGCTGGCGGTCTGAGAAGATG
GAAACCGTTAGCGGCTACGAGGCCAAGGTGTACAGTGCCACCAATGTGGAGCTGGTGACA
CGCACACGCACGGAGCACCTCTCAGATCAGGACAAGTCGAGGAGCAAAGGGGGGAAGACG
CCATTCCAGTCCTTCCTTGGGATGGCCCAGCAGCACTCCTCCCACAATGGGGCTCCCGTG
CAGCAGGCAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-290, - strand, RNAz p=0.975901

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-290, - strand, RNAz p=0.975901

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               38-333, gnl|bosTau2|chr12 (37986000-37985699)
               

               
               38-333, gnl|Hg17|chr11 (66815691-66816238)
               

               
               38-333, gnl|Mm7|chr19 (4175845-4175331)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-333, gnl|bosTau2|chr12 (37986000-37985699)
               

               
               38-333, gnl|Hg17|chr11 (66815691-66816238)
               

               
               38-333, gnl|Mm7|chr19 (4175845-4175331)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.255951)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.255951)

	38-333, gnl\|bosTau2\|chr12 (37986000-37985699)
	38-333, gnl\|Hg17\|chr11 (66815691-66816238)
	38-333, gnl\|Mm7\|chr19 (4175845-4175331)