Non-Coding RNA Search

Ss1.1-rcbr0_014051.5

Sequence:


               
               ATCGTCTCCTCCTGGGATATGAAACACATTAAAAACATTCTATTTAGGACACAAGAGCAA
ATGAAGATGTGTTACGAAGAATGTAGTAGTAATTCATTTAAATGTTTATGGGTCCTCGAT
TTTTTCTTTTATTATTCATAAAGCTGGTGTGTGTTTGCTATCATTGCTGTTCTCATATCT
TTAATTGTTGCGGAATTCAGCCTGTTAAAAAGTTGCAGAACTGTATTATGCTGTTATTTT
CTTTGTGAGCGCACGTTAACAAACTGAGCTTTGTCATAATAGAGCGATGTCATAATGCAG
GCGGTTGTGCTGTGGGTACGTATTGAAGTTTATGCCTATATATATAAAGATTTATCTTTT
ATTGTAGATATTTAGACTCTAAACCACCATAGAAATATCAGAACAGTTTGCTTTATAAGA
TTAAAGGCATCCTTCAGAATGGAGCTTGCTTTGTGCTTAGAAATAATACATTGAACTATT
TTGCAGTATACTATTTAAAATCTAAACTCCGTTGCTTTGCTGCCTTTTTTAAAAAGTGTG
AAATTTCAAATATTACTAGAGCTATTTTCCTGAAATACATTTGCAAAATAAGGCTGCTTT
ATAATTAAGGAATATTTTTGATCGAAGAAAATGACTGTACTGTGTTTCAAAAGTAAACTT
ATTTTATTATACAGTTTATTTCTTAAAAACTCTATTTATACGTTACCATGAAATCCATGA
CTACACTGAAGCTGGGGGTCCGTAATTCTTCCTGTTAAATATAAAACCCTGTAAGTTAGA
AACAGTAATGCCAACAGTGAATTTATTTTGAGGTCAGAGAACCGCTTGTTCTCATGTTTA
GATTAGAATCATTAAATCCATGTACTGTGTATGTCTACATATACTGTATGTCAAATGAGG
TGTTTCCAGTTGTGTTTTGCTTACGTCATTCAAAGATCACTTCTTGAGCATTAACAATAA
AAAGGGACGCTGTTTTGGTTTGGAATGTTGTCATCGACCCTGCCTGCAACTCTCCTTTTC
TCAGGCACTCAGAGCACACATGCTTTTGTATTTAGCTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGTCTCCTCCTGGGATATGAAACACATTAAAAACATTCTATTTAGGACACAAGAGCAA
ATGAAGATGTGTTACGAAGAATGTAGTAGTAATTCATTTAAATGTTTATGGGTCCTCGAT
TTTTTCTTTTATTATTCATAAAGCTGGTGTGTGTTTGCTATCATTGCTGTTCTCATATCT
TTAATTGTTGCGGAATTCAGCCTGTTAAAAAGTTGCAGAACTGTATTATGCTGTTATTTT
CTTTGTGAGCGCACGTTAACAAACTGAGCTTTGTCATAATAGAGCGATGTCATAATGCAG
GCGGTTGTGCTGTGGGTACGTATTGAAGTTTATGCCTATATATATAAAGATTTATCTTTT
ATTGTAGATATTTAGACTCTAAACCACCATAGAAATATCAGAACAGTTTGCTTTATAAGA
TTAAAGGCATCCTTCAGAATGGAGCTTGCTTTGTGCTTAGAAATAATACATTGAACTATT
TTGCAGTATACTATTTAAAATCTAAACTCCGTTGCTTTGCTGCCTTTTTTAAAAAGTGTG
AAATTTCAAATATTACTAGAGCTATTTTCCTGAAATACATTTGCAAAATAAGGCTGCTTT
ATAATTAAGGAATATTTTTGATCGAAGAAAATGACTGTACTGTGTTTCAAAAGTAAACTT
ATTTTATTATACAGTTTATTTCTTAAAAACTCTATTTATACGTTACCATGAAATCCATGA
CTACACTGAAGCTGGGGGTCCGTAATTCTTCCTGTTAAATATAAAACCCTGTAAGTTAGA
AACAGTAATGCCAACAGTGAATTTATTTTGAGGTCAGAGAACCGCTTGTTCTCATGTTTA
GATTAGAATCATTAAATCCATGTACTGTGTATGTCTACATATACTGTATGTCAAATGAGG
TGTTTCCAGTTGTGTTTTGCTTACGTCATTCAAAGATCACTTCTTGAGCATTAACAATAA
AAAGGGACGCTGTTTTGGTTTGGAATGTTGTCATCGACCCTGCCTGCAACTCTCCTTTTC
TCAGGCACTCAGAGCACACATGCTTTTGTATTTAGCTTTTTTTTTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               777-888, - strand, RNAz p=0.9843
               

               
               801-919, - strand, RNAz p=0.960699

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               777-888, - strand, RNAz p=0.9843
               

               
               801-919, - strand, RNAz p=0.960699

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               7-1066, gnl|bosTau2|chr11 (50568562-50569606)
               

               
               7-1066, gnl|canFam2|chr17 (26102929-26104500)
               

               
               7-1066, gnl|dasNov1|scaffold_6997 (62191-60629)
               

               
               7-1066, gnl|hg17|chr2 (29316537-29318102)
               

               
               7-1066, gnl|Hg17|chr2 (29317351-29318401)
               

               
               7-1066, gnl|loxAfr1|scaffold_56886 (12068-13665)
               

               
               7-1066, gnl|mm7|chr17 (70138057-70139519)
               

               
               7-1066, gnl|Mm7|chr17 (70138806-70139801)
               

               
               7-1066, gnl|monDom2|scaffold_1 (146367170-146365582)
               

               
               7-1066, gnl|oryCun1|scaffold_215351 (68166-66717)
               

               
               7-1066, gnl|panTro1|chr12 (30275446-30277011)
               

               
               7-1066, gnl|rheMac2|chr13 (29177296-29178862)
               

               
               7-1066, gnl|rn3|chr6 (23745468-23743993)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1066, gnl|bosTau2|chr11 (50568562-50569606)
               

               
               7-1066, gnl|canFam2|chr17 (26102929-26104500)
               

               
               7-1066, gnl|dasNov1|scaffold_6997 (62191-60629)
               

               
               7-1066, gnl|hg17|chr2 (29316537-29318102)
               

               
               7-1066, gnl|Hg17|chr2 (29317351-29318401)
               

               
               7-1066, gnl|loxAfr1|scaffold_56886 (12068-13665)
               

               
               7-1066, gnl|mm7|chr17 (70138057-70139519)
               

               
               7-1066, gnl|Mm7|chr17 (70138806-70139801)
               

               
               7-1066, gnl|monDom2|scaffold_1 (146367170-146365582)
               

               
               7-1066, gnl|oryCun1|scaffold_215351 (68166-66717)
               

               
               7-1066, gnl|panTro1|chr12 (30275446-30277011)
               

               
               7-1066, gnl|rheMac2|chr13 (29177296-29178862)
               

               
               7-1066, gnl|rn3|chr6 (23745468-23743993)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               sme (0.305437)
               

               
               pgl (0.236967)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               pgl (0.236967)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	777-888, - strand, RNAz p=0.9843
	801-919, - strand, RNAz p=0.960699

	7-1066, gnl\|bosTau2\|chr11 (50568562-50569606)
	7-1066, gnl\|canFam2\|chr17 (26102929-26104500)
	7-1066, gnl\|dasNov1\|scaffold_6997 (62191-60629)
	7-1066, gnl\|hg17\|chr2 (29316537-29318102)
	7-1066, gnl\|Hg17\|chr2 (29317351-29318401)
	7-1066, gnl\|loxAfr1\|scaffold_56886 (12068-13665)
	7-1066, gnl\|mm7\|chr17 (70138057-70139519)
	7-1066, gnl\|Mm7\|chr17 (70138806-70139801)
	7-1066, gnl\|monDom2\|scaffold_1 (146367170-146365582)
	7-1066, gnl\|oryCun1\|scaffold_215351 (68166-66717)
	7-1066, gnl\|panTro1\|chr12 (30275446-30277011)
	7-1066, gnl\|rheMac2\|chr13 (29177296-29178862)
	7-1066, gnl\|rn3\|chr6 (23745468-23743993)

	sme (0.305437)
	pgl (0.236967)
	mga (0.160205)
	bfe (0.149858)
	ski (0.146735)
	ste (0.135208)
	cbr (0.127975)
	sug (0.127291)
	spc (0.113366)