Ss1.1-rcbr0_014143.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTCTGTGCCATCACCGCCGCCGTCGCCAGTGCCACCACCACAGGCTGGGTCTGCAACT CTGAGGAGATCCCAGCCATCATGTCCATAGAGAAGATCTGGGCCCGGGAGATCCTGGACT CCCGTGGGAATCCCACAGTGGAGGTGGATCTCTACACTGCCAAAGGTCTCTTCCGGGCTG CGGTGCCCAGCGGAGCCTCCACTGGTATCTATGAGGCCCTGGAGCTAAGGGATGGTGACA AACAGCGATACTTAGGCAAAGGTGTCCTGAAGGCAGTGGACCACATCAACACCACCATCG CCCCAGCCCTCGTCAGCTCAGGCCTCTCTGTGGTGGAACAAGAGAAGCTGGACAACCTGA TGTTGGACTTGGATGGGACTGAGAACAAGTCCAAGTAGCTGGTGAAGGAAGCCATTGACA AGGCTGGCTACACGGAAAAGATTGTCATTGGCATGGATGTCGCTGCCTCGGAGTTTTATC GTGATGGCAAATACGACTTGGACTTCAAGTCTCCTGCCGATCCTTCCCGATACATCACTG GGGACCAGCTGGGGGCCCTCTACCAGGACTTTGTCAGGGACTATCCCGTGGTCTCCATCG AGGATCCCTTTGACCAAGACGATTGGGCTGCCTGGTCAAAGTTCACAGCCAACGTGGGGA TCCAGATCGTGGGTGATGACCTGACAGTGACCAACCCAAAGCGGATCGAGCGGGCGGTGG AGGAGAAGGCCTGCAACTGTCTCCTGCTGAAGGTCAACCAGATCGGCTCAGTCAGTGAAG CCATCCAAGCGTGCAAGCTGGCCCAGGAGAACGGCTGGGGGGTCATGGTGAGTCACCGCT CGGGAGAGACTGAGGACACGTTCATCGCGGACCTGGTGGTGGGGCTGTGCACGGGCCAGA TCAAGACTGGTGCCCCGTGCCGTTCTGAACGTCTGGCTAAGTACAACCAGCTCATGAGAA TTGAAGAAGAGCTGGGGGATGAAGCTCGCTTCGCAGGACATAATTTCCGCAACCCCAGCG TGCTGTGATCCCTCCACCTGCCTGGAGACTTGGAACCCCTTGCCCATCCTCCTGGAGCCT CTTCCTTCCTGTCCTGCTTGAAATTTCACCCCAGACACCCCGGTGGACCCCATGCGCTGC TCCTTGGCTCGTCCAGCACCTGCTGTCTCCCCTCTCCCCGTCTCTGGGTTCTGCACTGTC CACTCCTCCCTTTCTCCTCTCCCTCCTTAAAAACTGGCCATGGACCGAGGATTGTAAGGC ACCCACAGAAGACTGATCAGGGTCGGTGACGGAGTAGCAGGGCTGGTTAGAGAGGGGCCC CGTGTTGCTTGTGCTTTTTGTGCTGGATCCTGCGTTTCCATGCCCAGGAGGCAGGAGCTG TGCAGTGCGGAGTGGTGGGGCTGGCCTGAGGCTCTAGTGTATTATTTATTCATTTATTTA TTTTGCATTCGTCCTGTTAACTCATCCCTTCACCCTAACTCCAGGGCCAGAAACTGGCCT GACTGGAGGGGACCATGTGTCTGTATTTCATGTGACCACAGATGCAGCGATAGCCTGGGG TGGGAGTCTTGCTGGAACGGCAAGGGTGGCAGAAAGGGGACTTGCTGACAGTTCCTGTGT GTGTGCCAAGCCTTAACTGCAGCCTGGCTCGGTCCAGAGGTGGGGCTGCGTGCCTGGGGG CTCTTCCCCTGTCCCTCTCTTCCCAGCCCTAGCCTCCCTGCCCTTCCTCCAGCTGCACCT GAGCACTTCTGACTCCCCCGTGCCATGTTCCACAGCTGCCAGCATCTCTGTGGCATTGAA ATGTGCACCACCATTAAAGTCTGAGTCACCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTCTGTGCCATCACCGCCGCCGTCGCCAGTGCCACCACCACAGGCTGGGTCTGCAACT CTGAGGAGATCCCAGCCATCATGTCCATAGAGAAGATCTGGGCCCGGGAGATCCTGGACT CCCGTGGGAATCCCACAGTGGAGGTGGATCTCTACACTGCCAAAGGTCTCTTCCGGGCTG CGGTGCCCAGCGGAGCCTCCACTGGTATCTATGAGGCCCTGGAGCTAAGGGATGGTGACA AACAGCGATACTTAGGCAAAGGTGTCCTGAAGGCAGTGGACCACATCAACACCACCATCG CCCCAGCCCTCGTCAGCTCAGGCCTCTCTGTGGTGGAACAAGAGAAGCTGGACAACCTGA TGTTGGACTTGGATGGGACTGAGAACAAGTCCAAGTAGCTGGTGAAGGAAGCCATTGACA AGGCTGGCTACACGGAAAAGATTGTCATTGGCATGGATGTCGCTGCCTCGGAGTTTTATC GTGATGGCAAATACGACTTGGACTTCAAGTCTCCTGCCGATCCTTCCCGATACATCACTG GGGACCAGCTGGGGGCCCTCTACCAGGACTTTGTCAGGGACTATCCCGTGGTCTCCATCG AGGATCCCTTTGACCAAGACGATTGGGCTGCCTGGTCAAAGTTCACAGCCAACGTGGGGA TCCAGATCGTGGGTGATGACCTGACAGTGACCAACCCAAAGCGGATCGAGCGGGCGGTGG AGGAGAAGGCCTGCAACTGTCTCCTGCTGAAGGTCAACCAGATCGGCTCAGTCAGTGAAG CCATCCAAGCGTGCAAGCTGGCCCAGGAGAACGGCTGGGGGGTCATGGTGAGTCACCGCT CGGGAGAGACTGAGGACACGTTCATCGCGGACCTGGTGGTGGGGCTGTGCACGGGCCAGA TCAAGACTGGTGCCCCGTGCCGTTCTGAACGTCTGGCTAAGTACAACCAGCTCATGAGAA TTGAAGAAGAGCTGGGGGATGAAGCTCGCTTCGCAGGACATAATTTCCGCAACCCCAGCG TGCTGTGATCCCTCCACCTGCCTGGAGACTTGGAACCCCTTGCCCATCCTCCTGGAGCCT CTTCCTTCCTGTCCTGCTTGAAATTTCACCCCAGACACCCCGGTGGACCCCATGCGCTGC TCCTTGGCTCGTCCAGCACCTGCTGTCTCCCCTCTCCCCGTCTCTGGGTTCTGCACTGTC CACTCCTCCCTTTCTCCTCTCCCTCCTTAAAAACTGGCCATGGACCGAGGATTGTAAGGC ACCCACAGAAGACTGATCAGGGTCGGTGACGGAGTAGCAGGGCTGGTTAGAGAGGGGCCC CGTGTTGCTTGTGCTTTTTGTGCTGGATCCTGCGTTTCCATGCCCAGGAGGCAGGAGCTG TGCAGTGCGGAGTGGTGGGGCTGGCCTGAGGCTCTAGTGTATTATTTATTCATTTATTTA TTTTGCATTCGTCCTGTTAACTCATCCCTTCACCCTAACTCCAGGGCCAGAAACTGGCCT GACTGGAGGGGACCATGTGTCTGTATTTCATGTGACCACAGATGCAGCGATAGCCTGGGG TGGGAGTCTTGCTGGAACGGCAAGGGTGGCAGAAAGGGGACTTGCTGACAGTTCCTGTGT GTGTGCCAAGCCTTAACTGCAGCCTGGCTCGGTCCAGAGGTGGGGCTGCGTGCCTGGGGG CTCTTCCCCTGTCCCTCTCTTCCCAGCCCTAGCCTCCCTGCCCTTCCTCCAGCTGCACCT GAGCACTTCTGACTCCCCCGTGCCATGTTCCACAGCTGCCAGCATCTCTGTGGCATTGAA ATGTGCACCACCATTAAAGTCTGAGTCACCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 164-396, gnl|bosTau2|chr1 (78694269-78694043) | |
| 164-396, gnl|Hg17|chr12 (6895840-6897011) | |
| 164-396, gnl|Mm7|chr6 (124793968-124792829) | |
| 397-586, gnl|bosTau2|chr16 (31515189-31515000) | |
| 397-586, gnl|canFam2|chr5 (65302496-65302700) | |
| 397-586, gnl|danRer3|chr23 (31186891-31186683) | |
| 397-586, gnl|dasNov1|scaffold_27589 (4407-4624) | |
| 397-586, gnl|echTel1|scaffold_66085 (5241-5044) | |
| 397-586, gnl|fr1|chrUn (277308323-277308103) | |
| 397-586, gnl|galGal2|chr21 (3068646-3068861) | |
| 397-586, gnl|hg17|chr1 (8859590-8859808) | |
| 397-586, gnl|Hg17|chr1 (8859801-8859612) | |
| 397-586, gnl|loxAfr1|scaffold_6718 (72411-72625) | |
| 397-586, gnl|mm7|chr4 (149236318-149236113) | |
| 397-586, gnl|Mm7|chr4 (149236118-149236307) | |
| 397-586, gnl|monDom2|scaffold_148 (818467-818249) | |
| 397-586, gnl|oryCun1|scaffold_184064 (16288-16075) | |
| 397-586, gnl|panTro1|chr1 (8866704-8866921) | |
| 397-586, gnl|rheMac2|chr1 (11904286-11904503) | |
| 397-586, gnl|rn3|chr5 (167413742-167413534) | |
| 397-586, gnl|tetNig1|chrUn_random (46516269-46516069) | |
| 397-586, gnl|xenTro1|scaffold_464 (883301-883508) | |
| 588-793, gnl|bosTau2|chr16 (31514399-31514194) | |
| 588-793, gnl|Hg17|chr1 (8858418-8858213) | |
| 588-793, gnl|Mm7|chr4 (149236992-149237197) | |
| 957-1404, gnl|bosTau2|chr5 (60349866-60349424) | |
| 957-1404, gnl|Hg17|chr12 (6902153-6902667) | |
| 957-1404, gnl|Mm7|chr6 (124787534-124787040) | |
| 1502-1728, gnl|bosTau2|chr1 (78692802-78692577) | |
| 1502-1728, gnl|Hg17|chr12 (6902773-6903016) | |
| 1502-1728, gnl|Mm7|chr6 (124786860-124786642) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 164-396, gnl|bosTau2|chr1 (78694269-78694043) | |
| 164-396, gnl|Hg17|chr12 (6895840-6897011) | |
| 164-396, gnl|Mm7|chr6 (124793968-124792829) | |
| 397-586, gnl|bosTau2|chr16 (31515189-31515000) | |
| 397-586, gnl|canFam2|chr5 (65302496-65302700) | |
| 397-586, gnl|danRer3|chr23 (31186891-31186683) | |
| 397-586, gnl|dasNov1|scaffold_27589 (4407-4624) | |
| 397-586, gnl|echTel1|scaffold_66085 (5241-5044) | |
| 397-586, gnl|fr1|chrUn (277308323-277308103) | |
| 397-586, gnl|galGal2|chr21 (3068646-3068861) | |
| 397-586, gnl|hg17|chr1 (8859590-8859808) | |
| 397-586, gnl|Hg17|chr1 (8859801-8859612) | |
| 397-586, gnl|loxAfr1|scaffold_6718 (72411-72625) | |
| 397-586, gnl|mm7|chr4 (149236318-149236113) | |
| 397-586, gnl|Mm7|chr4 (149236118-149236307) | |
| 397-586, gnl|monDom2|scaffold_148 (818467-818249) | |
| 397-586, gnl|oryCun1|scaffold_184064 (16288-16075) | |
| 397-586, gnl|panTro1|chr1 (8866704-8866921) | |
| 397-586, gnl|rheMac2|chr1 (11904286-11904503) | |
| 397-586, gnl|rn3|chr5 (167413742-167413534) | |
| 397-586, gnl|tetNig1|chrUn_random (46516269-46516069) | |
| 397-586, gnl|xenTro1|scaffold_464 (883301-883508) | |
| 588-793, gnl|bosTau2|chr16 (31514399-31514194) | |
| 588-793, gnl|Hg17|chr1 (8858418-8858213) | |
| 588-793, gnl|Mm7|chr4 (149236992-149237197) | |
| 957-1404, gnl|bosTau2|chr5 (60349866-60349424) | |
| 957-1404, gnl|Hg17|chr12 (6902153-6902667) | |
| 957-1404, gnl|Mm7|chr6 (124787534-124787040) | |
| 1502-1728, gnl|bosTau2|chr1 (78692802-78692577) | |
| 1502-1728, gnl|Hg17|chr12 (6902773-6903016) | |
| 1502-1728, gnl|Mm7|chr6 (124786860-124786642) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cbr (4.73509) | |
| hyp (1.14269) | |
| fhi (0.847889) | |
| fce (0.814775) | |
| ece (0.687916) | |
| fcc (0.593354) | |
| pgl (0.35545) | |
| ebs (0.354904) | |
| fbs (0.350693) | |
| ecc (0.23007) | |
| sug (0.127291) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (4.73509) | |
| hyp (1.14269) | |
| fhi (0.847889) | |
| fce (0.814775) | |
| ece (0.687916) | |
| fcc (0.593354) | |
| pgl (0.35545) | |
| ebs (0.354904) | |
| fbs (0.350693) | |
| ecc (0.23007) | |
| sug (0.127291) |